zgc:114130 (Danio rerio)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSDARG00000040725 T02453_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.704
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.704
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.704
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.704
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.704
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.704
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.704
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000059659 CCCH ZF 76 102
ENSDARP00000059659 CCCH ZF 114 140

Links

Other CCCH ZF family RBPs
Other Danio rerio RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZFP36 Homo sapiens ENSG00000128016 D 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.815
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.815
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.815
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.704
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.815
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.815
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.741
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.796
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.833
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.815
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.852
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.833
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.815
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.815
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.796
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.815
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.704
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.815
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.704
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.815
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.815
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.704
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.815
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.815
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.704
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.796
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.815
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.833
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.815
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.815
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.815
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.704
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.759
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.759
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.759
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.759
AAD24208 Xenopus laevis AAD24208 I 0.815
AAD24209 Xenopus laevis AAD24209 I 0.815
AAH44086 Xenopus laevis AAH44086 I 0.815
AAH84197 Xenopus laevis AAH84197 I 0.815
AAH84221 Xenopus laevis AAH84221 I 0.815
AAI00163 Xenopus laevis AAI00163 I 0.815
BAC54909 Xenopus laevis BAC54909 I 0.815
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.815
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.833
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.815
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.704
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.815
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.815
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.815
Q805B4 Xenopus laevis Q805B4 I 0.815
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.722
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.778
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.815
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.796
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.796
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.815
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.815
ZFP36L2 Homo sapiens ENSG00000152518 I 0.815
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.815
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.704
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.815
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.815
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.759
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
zfp36l1a Danio rerio ENSDARG00000016154 I 0.815
zfp36l1b Danio rerio ENSDARG00000021443 I 0.815
zfp36l2 Danio rerio ENSDARG00000021806 I 0.833
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.852
ZFP36 Danio rerio ENSDARG00000044395 I 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.815
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.815
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.704
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.759
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.833
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.796
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.815
AAEL002308 Aedes aegypti AAEL002308 I 0.833
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.833
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.815
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.815
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.815
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.815
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.815
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.815
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.815
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.741
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.815
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.815
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.815
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.815
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.704
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.815
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.815
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.815
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.815
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.815
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.815
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.815
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.833
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.704
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.815
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.815
LOC100063597 Equus caballus ENSECAG00000018860 I 0.815
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.741
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.852
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.889
ZFP36L1 Homo sapiens ENSG00000185650 I 0.815
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.815
GF21384 Drosophila ananassae FBgn0098386 N 0.833
AGAP010954 Anopheles gambiae AGAP010954 N 0.815
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.778
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.709
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.759
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704
153596 Helobdella robusta 153596 N 0.778
Tis11 Drosophila melanogaster FBgn0011837 N 0.833
GE17025 Drosophila yakuba FBgn0234511 N 0.833
GK25600 Drosophila willistoni FBgn0227559 N 0.815
GJ15863 Drosophila virilis FBgn0203050 N 0.815
GM11580 Drosophila sechellia FBgn0166523 N 0.833
GL13141 Drosophila persimilis FBgn0150747 N 0.833
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.759
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.815
138584 Helobdella robusta 138584 N 0.704
GH17894 Drosophila grimshawi FBgn0125362 N 0.815
GG17735 Drosophila erecta FBgn0109957 N 0.833
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.833
GI21684 Drosophila mojavensis FBgn0144414 N 0.815