Ame_R016002 (Ailuropoda melanoleuca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Ame_R016002 T05970_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		1.000
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		1.000
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		1.000
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		1.000
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		1.000
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		1.000
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		1.000
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R016002 CCCH ZF 95 121
Ame_R016002 CCCH ZF 133 159

Links

Other CCCH ZF family RBPs
Other Ailuropoda melanoleuca RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 1.000
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 1.000
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 1.000
ZFP36 Pan troglodytes ENSPTRG00000010968 I 1.000
ZFP36 Sus scrofa ENSSSCG00000010708 I 1.000
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 1.000
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 1.000
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 1.000
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 1.000
ZFP36 Homo sapiens ENSG00000128016 D 1.000
ZFP36 Cavia porcellus ENSCPOG00000011363 I 1.000
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 1.000
Zfp36 Mus musculus ENSMUSG00000044786 I 0.981
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.963
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.963
ZFP36 Canis familiaris ENSCAFG00000005530 I 0.889
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.852
AAD24207 Xenopus laevis AAD24207 I 0.852
AAH82435 Xenopus laevis AAH82435 I 0.852
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.852
AAI08849 Xenopus laevis AAI08849 I 0.852
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.815
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.796
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.759
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.759
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.759
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.741
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.741
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.741
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.741
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.741
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.741
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.741
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.741
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.741
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.741
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.741
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.741
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.741
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.741
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.741
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.741
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.741
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.741
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.741
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.741
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.741
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.741
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.741
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.741
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.741
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.741
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.741
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.741
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.741
AAH44086 Xenopus laevis AAH44086 I 0.741
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.741
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.741
ZFP36L2 Homo sapiens ENSG00000152518 I 0.741
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.722
Q805B4 Xenopus laevis Q805B4 I 0.722
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.722
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.722
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.722
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.722
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.722
ZFP36L1 Homo sapiens ENSG00000185650 I 0.722
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.722
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.722
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.722
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.722
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.722
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.722
AAD24209 Xenopus laevis AAD24209 I 0.722
AAH84197 Xenopus laevis AAH84197 I 0.722
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.722
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.722
AAH84221 Xenopus laevis AAH84221 I 0.722
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.722
AAI00163 Xenopus laevis AAI00163 I 0.722
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.722
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.722
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.722
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.722
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.722
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.722
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.722
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.722
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.722
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.722
zfp36l1a Danio rerio ENSDARG00000016154 I 0.722
zfp36l1b Danio rerio ENSDARG00000021443 I 0.722
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.722
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.722
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.722
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.722
0300010273 Ostreococcus tauri 0300010273 I 0.722
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.722
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.722
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.722
LOC100063597 Equus caballus ENSECAG00000018860 I 0.722
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.722
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.722
AAD24208 Xenopus laevis AAD24208 I 0.722
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.722
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.722
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.722
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.722
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.722
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.722
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.704
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.704
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.704
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
zgc:114130 Danio rerio ENSDARG00000040725 I 0.704
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.704
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.704
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.704
AAEL002308 Aedes aegypti AAEL002308 I 0.704
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.704