CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000005456
(
Pongo pygmaeus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSPPYG00000005456
T03198_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.882
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.882
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000006216
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSPPYP00000006216
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSPPYP00000006216
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSPPYP00000006216
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
ENSPPYP00000006217
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSPPYP00000006217
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSPPYP00000006217
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSPPYP00000006217
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
ENSPPYP00000006218
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSPPYP00000006218
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSPPYP00000006218
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSPPYP00000006218
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
ENSPPYP00000006219
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSPPYP00000006219
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSPPYP00000006219
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSPPYP00000006219
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Pongo pygmaeus
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.000
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.000
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.000
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.000
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.000
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.000
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.000
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.000
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.000
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.000
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.000
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.000
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.000
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.000
CAC95017
Xenopus laevis
CAC95017
N
0.000