MBNL1 (Taeniopygia guttata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTGUG00000011341 T03466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		1.000
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011692 CCCH ZF 19 43
ENSTGUP00000011692 CCCH ZF 60 75
ENSTGUP00000011692 CCCH ZF 182 208
ENSTGUP00000011692 CCCH ZF 219 242

Links

Other CCCH ZF family RBPs
Other Taeniopygia guttata RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI3G45896 Brachypodium distachyon BRADI3G45896 N 0.000
B9N0I0_POPTR Populus trichocarpa POPTR_0004s23730 N 0.000
SB04G022813 Sorghum bicolor Sb04g022813 N 0.000
Cucsa.114380 Cucumis sativus Cucsa.114380 N 0.000
GRMZM2G047528 Zea mays GRMZM2G047528 N 0.000
Medtr2g005290 Medicago truncatula Medtr2g005290 N 0.000
MDP0000264809 Malus x domestica MDP0000264809 N 0.000