CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL1
(
Taeniopygia guttata
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTGUG00000011341
T03466_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
1.000
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000011692
CCCH ZF
19
43
LEVCREFQRGTCSRPDTECKFAHPS
ENSTGUP00000011692
CCCH ZF
60
75
LKGRCSRENCKYLHPP
ENSTGUP00000011692
CCCH ZF
182
208
DRLEVCREYQRGNCNRGENDCRFAHPA
ENSTGUP00000011692
CCCH ZF
219
242
TVTVCMDYIKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Taeniopygia guttata
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AMAG_04069
Allomyces macrogynus
AMAG_04069
N
0.000