MBNL1 (Taeniopygia guttata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTGUG00000011341 T03466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		1.000
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011692 CCCH ZF 19 43
ENSTGUP00000011692 CCCH ZF 60 75
ENSTGUP00000011692 CCCH ZF 182 208
ENSTGUP00000011692 CCCH ZF 219 242

Links

Other CCCH ZF family RBPs
Other Taeniopygia guttata RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rbp1-like Drosophila melanogaster FBgn0030479 D 0.000
Rbp1 Drosophila melanogaster FBgn0260944 D 0.000
AAH46661 Xenopus laevis AAH46661 I 0.000
SFRS3 Taeniopygia guttata ENSTGUG00000000928 I 0.000
SRSF3 Tetraodon nigroviridis ENSTNIG00000001003 I 0.000
SRSF3 Tursiops truncatus ENSTTRG00000013447 I 0.000
SRSF3 Vicugna pacos ENSVPAG00000005481 I 0.000
srsf3 Xenopus tropicalis ENSXETG00000001701 I 0.000
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 0.000
SRSF3 Tupaia belangeri ENSTBEG00000012272 I 0.000
SRSF3 Spermophilus tridecemlineatus ENSSTOG00000014280 I 0.000
SRSF3 Sus scrofa ENSSSCG00000001564 I 0.000
Sfrs3 Rattus norvegicus ENSRNOG00000000520 I 0.000
SRSF3 Pteropus vampyrus ENSPVAG00000014621 I 0.000
XR_022443.1 Pan troglodytes ENSPTRG00000018106 I 0.000
ENSPPYG00000016548 Pongo pygmaeus ENSPPYG00000016548 I 0.000
SRSF3 Oryzias latipes ENSORLG00000020054 I 0.000
SRSF3 Oryzias latipes ENSORLG00000000292 I 0.000
GF17902 Drosophila ananassae FBgn0094920 I 0.000
GF19500 Drosophila ananassae FBgn0096507 I 0.000
Ame_R002060 Ailuropoda melanoleuca Ame_R002060 I 0.000
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.000
estExt_fgenesh1_pm.C_10147 Daphnia pulex estExt_fgenesh1_pm.C_10147 I 0.000
PHUM565080 Pediculus humanus PHUM565080 I 0.000
PHUM357390 Pediculus humanus PHUM357390 I 0.000
GE26048 Drosophila yakuba FBgn0243090 I 0.000
GE16161 Drosophila yakuba FBgn0233705 I 0.000
GK16401 Drosophila willistoni FBgn0218403 I 0.000
GJ14774 Drosophila virilis FBgn0201978 I 0.000
GD18708 Drosophila simulans FBgn0190229 I 0.000
GM23896 Drosophila sechellia FBgn0178761 I 0.000
GL26725 Drosophila persimilis FBgn0164306 I 0.000
GI15337 Drosophila mojavensis FBgn0138086 I 0.000
GH24472 Drosophila grimshawi FBgn0131928 I 0.000
GG19507 Drosophila erecta FBgn0111709 I 0.000
GG17683 Drosophila erecta FBgn0109905 I 0.000
SRSF3 Ochotona princeps ENSOPRG00000006006 I 0.000
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.000
ENSDORG00000012283 Dipodomys ordii ENSDORG00000012283 I 0.000
srsf3b Danio rerio ENSDARG00000059360 I 0.000
srsf3a Danio rerio ENSDARG00000025397 I 0.000
ENSCSAVG00000002676 Ciona savignyi ENSCSAVG00000002676 I 0.000
SRSF3 Cavia porcellus ENSCPOG00000003722 I 0.000
LOC100408013 Callithrix jacchus ENSCJAG00000016062 I 0.000
ENSCING00000011663 Ciona intestinalis ENSCING00000011663 I 0.000
Q9XSU6_CANFA Canis familiaris ENSCAFG00000001414 I 0.000
SFRS3_BOVIN Bos taurus ENSBTAG00000040006 I 0.000
SRSF3 Anolis carolinensis ENSACAG00000016637 I 0.000
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.000
AGAP007325 Anopheles gambiae AGAP007325 I 0.000
AAEL001356 Aedes aegypti AAEL001356 I 0.000
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.000
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.000
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.000
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.000
LOC100053336 Equus caballus ENSECAG00000018741 I 0.000
ENSLAFG00000018193 Loxodonta africana ENSLAFG00000018193 I 0.000
SRSF3 Macaca mulatta ENSMMUG00000014306 I 0.000
SRSF3 Monodelphis domestica ENSMODG00000013539 I 0.000
SRSF3 Gorilla gorilla ENSGGOG00000017186 I 0.000
Srsf3 Mus musculus ENSMUSG00000071172 I 0.000
SFRS3 Gallus gallus ENSGALG00000000533 I 0.000
Gm12355 Mus musculus ENSMUSG00000078134 I 0.000
SRSF3 Oryctolagus cuniculus ENSOCUG00000006684 I 0.000
SRSF3 Homo sapiens ENSG00000112081 I 0.000
SRSF3 Felis catus ENSFCAG00000001084 I 0.000
SRSF3 Echinops telfairi ENSETEG00000010117 I 0.000
SRSF3 Microcebus murinus ENSMICG00000004674 I 0.000
gw.267.29.1 Branchiostoma floridae gw.267.29.1 N 0.000
SRSF3 Myotis lucifugus ENSMLUG00000010671 N 0.000
ENSLAFG00000026731 Loxodonta africana ENSLAFG00000026731 N 0.000
SRSF7 Spermophilus tridecemlineatus ENSSTOG00000004389 N 0.000
SRSF3 Otolemur garnettii ENSOGAG00000000502 N 0.000
SRSF3 Choloepus hoffmanni ENSCHOG00000002515 N 0.000
GM13734 Drosophila sechellia FBgn0168665 N 0.000
SRSF3 Gasterosteus aculeatus ENSGACG00000001473 N 0.000
SRSF3 Tetraodon nigroviridis ENSTNIG00000014643 N 0.000
SRSF3 Gasterosteus aculeatus ENSGACG00000001042 N 0.000
SRSF3 Erinaceus europaeus ENSEEUG00000001119 N 0.000