CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL1
(
Tetraodon nigroviridis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTNIG00000003878
T03479_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.913
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.913
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000006481
CCCH ZF
16
40
LEVCREFQRGTCSRSDQDCKFAHPA
ENSTNIP00000006481
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSTNIP00000006481
CCCH ZF
187
213
DRLEVCREYQRGSCTRAENECRFAHPA
ENSTNIP00000006481
CCCH ZF
224
247
TVTVCMDYIKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Tetraodon nigroviridis
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa005132m
Prunus persica
ppa005132m
N
0.000
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.000
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.000
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.000
mgf012147m
Mimulus guttatus
mgf012147m
N
0.000
mgf009486m
Mimulus guttatus
mgf009486m
N
0.000
mgf009385m
Mimulus guttatus
mgf009385m
N
0.000
mgf004139m
Mimulus guttatus
mgf004139m
N
0.000
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.000
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.000
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.000
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.000
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.000
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.000
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.000
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.000
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.000
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.000
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.000
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.000
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.000
ppa005122m
Prunus persica
ppa005122m
N
0.000
ppa005119m
Prunus persica
ppa005119m
N
0.000
ppa004834m
Prunus persica
ppa004834m
N
0.000
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.000
MDP0000907782
Malus x domestica
MDP0000907782
N
0.000
MDP0000642684
Malus x domestica
MDP0000642684
N
0.000
MDP0000609551
Malus x domestica
MDP0000609551
N
0.000
MDP0000204698
Malus x domestica
MDP0000204698
N
0.000
MDP0000188788
Malus x domestica
MDP0000188788
N
0.000
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.000
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.000
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.000
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.000
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.000
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.000
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.000
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.000
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.000
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.000
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.000
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.000
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.000
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.000
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.000
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.000
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.000
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.000
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.000
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.000
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.000
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.000
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.000
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.000
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.000
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.000
PK25912.1
Cannabis sativa
PK25912.1
N
0.000
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.000
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.000
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.000
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.000
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.000
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.000
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.000
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.000
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.000
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.000
30048.m000319
Ricinus communis
30048.m000319
N
0.000
29608.m000212
Ricinus communis
29608.m000212
N
0.000
27613.m000635
Ricinus communis
27613.m000635
N
0.000
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.000
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.000
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.000
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.000
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.000
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.000
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.000
PK13457.1
Cannabis sativa
PK13457.1
N
0.000