fgenesh1_pg.C_scaffold_4000193 (Sporobolomyces roseus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.C_scaffold_4000193 T05231_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_4000193 CCCH ZF 691 717
fgenesh1_pg.C_scaffold_4000193 CCCH ZF 729 754

Links

Other CCCH ZF family RBPs
Other Sporobolomyces roseus RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.722
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.704
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.704
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.704
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.000
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.722
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.000
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.000
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.000
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.704
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.722
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.704
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.704
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.000
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.704
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.704
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.704
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.704
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.704
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.704
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.000
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.704
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.704
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.704
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.704
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.704
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.704
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.704
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.704
AAD24208 Xenopus laevis AAD24208 I 0.722
AAD24209 Xenopus laevis AAD24209 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.704
AAH84197 Xenopus laevis AAH84197 I 0.722
AAH84221 Xenopus laevis AAH84221 I 0.704
AAI00163 Xenopus laevis AAI00163 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.704
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.704
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.000
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.722
Q805B4 Xenopus laevis Q805B4 I 0.704
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.000
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.000
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.704
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.704
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.000
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.000
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.704
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.000
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.704
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.000
AAEL002308 Aedes aegypti AAEL002308 I 0.000
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.704
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.000
zfp36l1b Danio rerio ENSDARG00000021443 I 0.704
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.000
zgc:114130 Danio rerio ENSDARG00000040725 I 0.000
ZFP36 Danio rerio ENSDARG00000044395 I 0.000
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.704
zfp36l1a Danio rerio ENSDARG00000016154 I 0.704
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.704
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.704
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.704
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.704
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.000
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.704
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.704
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.704
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.704
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.704
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.704
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.704
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.704
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.704
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.704
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.000
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.704
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.704
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.000
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.704
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.000
ZFP36L2 Homo sapiens ENSG00000152518 I 0.704
ZFP36L1 Homo sapiens ENSG00000185650 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 0.704
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.000
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.722
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.000
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.704
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.000
GE17025 Drosophila yakuba FBgn0234511 N 0.000
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
AGAP010954 Anopheles gambiae AGAP010954 N 0.000
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.000
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.000
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.000
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.000
Tis11 Drosophila melanogaster FBgn0011837 N 0.000
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.000
GF21384 Drosophila ananassae FBgn0098386 N 0.000
GG17735 Drosophila erecta FBgn0109957 N 0.000
GH17894 Drosophila grimshawi FBgn0125362 N 0.000
GI21684 Drosophila mojavensis FBgn0144414 N 0.000
GL13141 Drosophila persimilis FBgn0150747 N 0.000
GM11580 Drosophila sechellia FBgn0166523 N 0.000
GJ15863 Drosophila virilis FBgn0203050 N 0.000
GK25600 Drosophila willistoni FBgn0227559 N 0.000
138584 Helobdella robusta 138584 N 0.000
153596 Helobdella robusta 153596 N 0.000
64152 Helobdella robusta 64152 N 0.000
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.000
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.000
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.000