CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A7TTU4_VANPO
(
Vanderwaltozyma polyspora
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
A7TTU4_VANPO
T05920_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
A7TTU4
CCCH ZF
33
58
YSHVPCKFFKQGNCQAGDHCPFSHEL
A7TTU4
CCCH ZF
67
87
IPCKYYQKGNCKFGSNCANLH
Links
Other
CCCH ZF
family RBPs
Other
Vanderwaltozyma polyspora
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.729
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.760
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.708
ADR062W
Ashbya gossypii
ADR062W
N
0.700
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.729
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.714
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.729
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.776
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.714
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.714
orf19.7385
Candida albicans
orf19.7385
N
0.750
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.708
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.708
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.760