cassava45172.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava45172.m1 T13441_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava45172.m1 CCHC ZF 67 84

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

2 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ010645 Culex pipiens CpipJ_CPIJ010645 N 0.000
GF19039 Drosophila ananassae FBgn0096051 N 0.000
GG16439 Drosophila erecta FBgn0108670 N 0.000
GH23931 Drosophila grimshawi FBgn0131388 N 0.000
GL18179 Drosophila persimilis FBgn0155782 N 0.000
GM26772 Drosophila sechellia FBgn0181625 N 0.000
GD24374 Drosophila simulans FBgn0195715 N 0.000
GJ14351 Drosophila virilis FBgn0201564 N 0.000
GK13697 Drosophila willistoni FBgn0215705 N 0.000
GA16600-RA Drosophila pseudoobscura FBgn0076615 N 0.000
gw Drosophila melanogaster FBgn0051992 N 0.000
CPIJ011735 Culex quinquefasciatus CPIJ011735 N 0.000
CpipJ_CPIJ011735 Culex pipiens CpipJ_CPIJ011735 N 0.000
amel4_ncbi_hmm5263 Apis mellifera amel4_ncbi_hmm5263 N 0.000
DGIL_AUG5s11561g1t1 Acyrtosiphon pisum DGIL_AUG5s11561g1t1 N 0.000
AAEL007436 Aedes aegypti AAEL007436 N 0.000
AAEL801228 Aedes aegypti AAEL007447 N 0.000
AGAP007802 Anopheles gambiae AGAP007802 N 0.000
AGAP007808 Anopheles gambiae AGAP007808 N 0.000
CPIJ010645 Culex quinquefasciatus CPIJ010645 N 0.000
BGIBMGA005589 Bombyx mori BGIBMGA005589 N 0.000