CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm5263
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm5263
T31926_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm5263
RRM
1438
1502
LLLKNLTPQIDGSTLKTLCMQHGPVQDFRLYLNHGIALTKYSSRDEAIKAQGALNNCVLGNTTIF
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.831
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.831
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.815
AGAP007802
Anopheles gambiae
AGAP007802
N
0.815
AAEL007436
Aedes aegypti
AAEL007436
N
0.800
GL18179
Drosophila persimilis
FBgn0155782
N
0.785
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.785
GJ14351
Drosophila virilis
FBgn0201564
N
0.769
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.769
GF19039
Drosophila ananassae
FBgn0096051
N
0.769
GM26772
Drosophila sechellia
FBgn0181625
N
0.754
GD24374
Drosophila simulans
FBgn0195715
N
0.754
GK13697
Drosophila willistoni
FBgn0215705
N
0.754
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.754
GH23931
Drosophila grimshawi
FBgn0131388
N
0.754
gw
Drosophila melanogaster
FBgn0051992
N
0.754
GG16439
Drosophila erecta
FBgn0108670
N
0.738
GE14506
Drosophila yakuba
FBgn0232110
N
0.738
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.738
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.738
AAEL007449
Aedes aegypti
AAEL007449
N
0.738
TNRC6B
Gasterosteus aculeatus
ENSGACG00000007421
N
0.738
AAEL801228
Aedes aegypti
AAEL007447
N
0.723
TNRC6A
Takifugu rubripes
ENSTRUG00000009839
N
0.708
AGAP007808
Anopheles gambiae
AGAP007808
N
0.708
TNRC6A
Oryzias latipes
ENSORLG00000012798
N
0.708
TNRC6A
Gasterosteus aculeatus
ENSGACG00000014332
N
0.708