CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s11561g1t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s11561g1t1
T31980_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s11561g1t1
RRM
1366
1430
LLLRNLTQQIDGSTLKTLCIQHGPLLNFHMYLNHGIALAKYSTREEASKAQGALNNCVLGNTTIF
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.846
AGAP007802
Anopheles gambiae
AGAP007802
N
0.831
GL18179
Drosophila persimilis
FBgn0155782
N
0.815
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.815
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.815
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.815
GG16439
Drosophila erecta
FBgn0108670
N
0.800
GJ14351
Drosophila virilis
FBgn0201564
N
0.800
GM26772
Drosophila sechellia
FBgn0181625
N
0.785
GD24374
Drosophila simulans
FBgn0195715
N
0.785
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.785
GH23931
Drosophila grimshawi
FBgn0131388
N
0.785
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.785
AAEL801228
Aedes aegypti
AAEL007447
N
0.785
gw
Drosophila melanogaster
FBgn0051992
N
0.785
GF19039
Drosophila ananassae
FBgn0096051
N
0.785
AAEL007436
Aedes aegypti
AAEL007436
N
0.785
GE14506
Drosophila yakuba
FBgn0232110
N
0.769
GK13697
Drosophila willistoni
FBgn0215705
N
0.769
AGAP007808
Anopheles gambiae
AGAP007808
N
0.754
TNRC6B
Gasterosteus aculeatus
ENSGACG00000007421
N
0.723
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.708
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.708