PUM1 (Oryzias latipes)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSORLG00000011482 T24248_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.938
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.938
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.908
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.908
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.908
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.908
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.908
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.788
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.788
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.788
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.788
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.788
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.788
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000014384 PUF 849 883
ENSORLP00000014384 PUF 885 917
ENSORLP00000014384 PUF 921 953
ENSORLP00000014384 PUF 959 993
ENSORLP00000014384 PUF 995 1029
ENSORLP00000014384 PUF 1031 1065
ENSORLP00000014384 PUF 1067 1101
ENSORLP00000014384 PUF 1113 1144
ENSORLP00000014385 PUF 759 793
ENSORLP00000014385 PUF 795 827
ENSORLP00000014385 PUF 831 865
ENSORLP00000014385 PUF 867 901
ENSORLP00000014385 PUF 903 937
ENSORLP00000014385 PUF 939 973
ENSORLP00000014385 PUF 975 1009
ENSORLP00000014385 PUF 1021 1052
ENSORLP00000014387 PUF 740 774
ENSORLP00000014387 PUF 776 808
ENSORLP00000014387 PUF 812 844
ENSORLP00000014387 PUF 850 884
ENSORLP00000014387 PUF 886 920
ENSORLP00000014387 PUF 922 956
ENSORLP00000014387 PUF 958 992
ENSORLP00000014387 PUF 1004 1035
ENSORLP00000014388 PUF 591 625
ENSORLP00000014388 PUF 627 659
ENSORLP00000014388 PUF 663 697
ENSORLP00000014388 PUF 699 733
ENSORLP00000014388 PUF 735 769
ENSORLP00000014388 PUF 771 805
ENSORLP00000014388 PUF 807 841
ENSORLP00000014388 PUF 853 884
ENSORLP00000014390 PUF 587 621
ENSORLP00000014390 PUF 623 655
ENSORLP00000014390 PUF 659 691
ENSORLP00000014390 PUF 697 731
ENSORLP00000014390 PUF 733 767
ENSORLP00000014390 PUF 769 803
ENSORLP00000014390 PUF 805 839
ENSORLP00000014390 PUF 851 882
ENSORLP00000014391 PUF 822 856
ENSORLP00000014391 PUF 858 890
ENSORLP00000014391 PUF 894 926
ENSORLP00000014391 PUF 932 966
ENSORLP00000014391 PUF 968 1002
ENSORLP00000014391 PUF 1004 1038
ENSORLP00000014391 PUF 1040 1074
ENSORLP00000014391 PUF 1086 1117

Links

Other PUF family RBPs
Other Oryzias latipes RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RAVER2 Canis familiaris ENSCAFG00000018617 N 0.000
RAVER2 Pteropus vampyrus ENSPVAG00000007172 N 0.000
RAVER2 Otolemur garnettii ENSOGAG00000011157 N 0.000
RAVER2 Oryctolagus cuniculus ENSOCUG00000006221 N 0.000
RAVER2 Ornithorhynchus anatinus ENSOANG00000008327 N 0.000
RAVER2 Monodelphis domestica ENSMODG00000001242 N 0.000
RAVER2 Meleagris gallopavo ENSMGAG00000011806 N 0.000
RAVER2 Loxodonta africana ENSLAFG00000012508 N 0.000
RAVER2 Gorilla gorilla ENSGGOG00000016447 N 0.000
RAVER2 Gallus gallus ENSGALG00000011026 N 0.000
RAVER2 Equus caballus ENSECAG00000022014 N 0.000
Raver2 Dipodomys ordii ENSDORG00000002498 N 0.000
RAVER2 Tupaia belangeri ENSTBEG00000009004 N 0.000