PUM1 (Oryzias latipes)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSORLG00000011482 T24248_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.938
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.938
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.908
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.908
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.908
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.908
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.908
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.788
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.788
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.788
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.788
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.788
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.788
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000014384 PUF 849 883
ENSORLP00000014384 PUF 885 917
ENSORLP00000014384 PUF 921 953
ENSORLP00000014384 PUF 959 993
ENSORLP00000014384 PUF 995 1029
ENSORLP00000014384 PUF 1031 1065
ENSORLP00000014384 PUF 1067 1101
ENSORLP00000014384 PUF 1113 1144
ENSORLP00000014385 PUF 759 793
ENSORLP00000014385 PUF 795 827
ENSORLP00000014385 PUF 831 865
ENSORLP00000014385 PUF 867 901
ENSORLP00000014385 PUF 903 937
ENSORLP00000014385 PUF 939 973
ENSORLP00000014385 PUF 975 1009
ENSORLP00000014385 PUF 1021 1052
ENSORLP00000014387 PUF 740 774
ENSORLP00000014387 PUF 776 808
ENSORLP00000014387 PUF 812 844
ENSORLP00000014387 PUF 850 884
ENSORLP00000014387 PUF 886 920
ENSORLP00000014387 PUF 922 956
ENSORLP00000014387 PUF 958 992
ENSORLP00000014387 PUF 1004 1035
ENSORLP00000014388 PUF 591 625
ENSORLP00000014388 PUF 627 659
ENSORLP00000014388 PUF 663 697
ENSORLP00000014388 PUF 699 733
ENSORLP00000014388 PUF 735 769
ENSORLP00000014388 PUF 771 805
ENSORLP00000014388 PUF 807 841
ENSORLP00000014388 PUF 853 884
ENSORLP00000014390 PUF 587 621
ENSORLP00000014390 PUF 623 655
ENSORLP00000014390 PUF 659 691
ENSORLP00000014390 PUF 697 731
ENSORLP00000014390 PUF 733 767
ENSORLP00000014390 PUF 769 803
ENSORLP00000014390 PUF 805 839
ENSORLP00000014390 PUF 851 882
ENSORLP00000014391 PUF 822 856
ENSORLP00000014391 PUF 858 890
ENSORLP00000014391 PUF 894 926
ENSORLP00000014391 PUF 932 966
ENSORLP00000014391 PUF 968 1002
ENSORLP00000014391 PUF 1004 1038
ENSORLP00000014391 PUF 1040 1074
ENSORLP00000014391 PUF 1086 1117

Links

Other PUF family RBPs
Other Oryzias latipes RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.978
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.974
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.960
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.956
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.956
PUM1 Microcebus murinus ENSMICG00000007713 I 0.952
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.952
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.952
BAC57980 Xenopus laevis BAC57980 I 0.949
AAH80379 Xenopus laevis AAH80379 I 0.949
AAL14121 Xenopus laevis AAL14121 I 0.945
PUM1 Homo sapiens ENSG00000134644 D 0.941
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.941
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.941
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.941
PUM1 Sus scrofa ENSSSCG00000003591 I 0.941
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.938
PUM1 Bos taurus ENSBTAG00000018979 I 0.938
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.935
Pum1 Mus musculus ENSMUSG00000028580 I 0.935
PUM1 Sorex araneus ENSSARG00000003055 I 0.934
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.934
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.934
BAB20864 Xenopus laevis BAB20864 I 0.934
PUM1 Canis familiaris ENSCAFG00000011205 I 0.934
PUM1 Equus caballus ENSECAG00000021369 I 0.931
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.931
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.930
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.930
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.927
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.923
PUM2 Sus scrofa ENSSSCG00000008600 I 0.909
PUM2 Homo sapiens ENSG00000055917 D 0.909
PUM2 Bos taurus ENSBTAG00000011155 I 0.909
Pum2 Mus musculus ENSMUSG00000020594 D 0.909
PUM2 Equus caballus ENSECAG00000021930 I 0.909
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.909
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.909
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.909
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.908
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.908
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.908
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.908
PUM2 Canis familiaris ENSCAFG00000003839 I 0.908
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.905
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.905
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.902
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.902
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.902
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.902
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.902
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.897
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.890
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.886
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.876
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.875
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.875
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.875
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.872
PUM2 Oryzias latipes ENSORLG00000012611 I 0.861
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.819
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.817
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.817
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.808
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.802
PHUM490070 Pediculus humanus PHUM490070 I 0.795
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.793
AGAP003914 Anopheles gambiae AGAP003914 I 0.791
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.788
GM26283 Drosophila sechellia FBgn0181138 I 0.788
pum Drosophila melanogaster FBgn0003165 D 0.788
AAEL012420 Aedes aegypti AAEL012420 I 0.788
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.788
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.784
GG17394 Drosophila erecta FBgn0109620 I 0.784
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.784
GE24797 Drosophila yakuba FBgn0241899 I 0.784
GF18428 Drosophila ananassae FBgn0095446 I 0.784
GK14049 Drosophila willistoni FBgn0216055 I 0.784
GH15257 Drosophila grimshawi FBgn0122732 I 0.781
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.781
GI22503 Drosophila mojavensis FBgn0145231 I 0.781
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.780
GJ10105 Drosophila virilis FBgn0197393 I 0.777
GL22345 Drosophila persimilis FBgn0159937 I 0.770
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.770
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.766
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.735