PK05006.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK05006.1 T31640_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK05006.1 RRM 8 74

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa024222m Prunus persica ppa024222m N 0.761
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.791
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.761
GRMZM2G035719 Zea mays GRMZM2G035719 N 0.725
mgf014593m Mimulus guttatus mgf014593m N 0.806
mgf007506m Mimulus guttatus mgf007506m N 0.836
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.812
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.812
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.812
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.731
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.725
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.821
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.791
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.710
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.806
PDK_20s1330821g002 Phoenix dactylifera PDK_20s1330821g002 N 0.716
MDP0000596287 Malus x domestica MDP0000596287 N 0.896
MDP0000243576 Malus x domestica MDP0000243576 N 0.761
MDP0000177505 Malus x domestica MDP0000177505 N 0.791
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.821
cassava28770.m1 Manihot esculenta cassava28770.m1 N 0.716
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.809
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.797
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.716
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.765
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.791
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.725
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.776
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.754
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.761
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.765
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.910
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.881
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.754
30073.m002271 Ricinus communis 30073.m002271 N 0.881
29682.m000595 Ricinus communis 29682.m000595 N 0.821
SB10G000940 Sorghum bicolor Sb10g000940 N 0.776
SB01G010170 Sorghum bicolor Sb01g010170 N 0.725
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.836
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.896
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.776
LOC_Os04g50790 Oryza sativa LOC_Os04g50790 N 0.706
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.761