PK11625.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK11625.1 T31674_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK11625.1 RRM 26 87
PK11625.1 RRM 118 181

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK24775.1 Cannabis sativa PK24775.1 N 0.734
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.874
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.750
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.750
mgf011722m Mimulus guttatus mgf011722m N 0.773
mgf013695m Mimulus guttatus mgf013695m N 0.833
mgf016209m Mimulus guttatus mgf016209m N 0.833
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.719
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.734
MDP0000288452 Malus x domestica MDP0000288452 N 0.773
MDP0000583927 Malus x domestica MDP0000583927 N 0.844
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.773
ppa005993m Prunus persica ppa005993m N 0.773
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.766
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.750
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.750
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.750
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.734
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.742
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.773
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.766
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.742
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.742
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.773
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.742
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.766
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.758
SB04G001910 Sorghum bicolor Sb04g001910 N 0.700
ppa008562m Prunus persica ppa008562m N 0.866