ppa005993m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005993m T58368_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005993m RRM 75 136
ppa005993m RRM 171 234

Links

Other RRM family RBPs
Other Prunus persica RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000288452 Malus x domestica MDP0000288452 N 0.992
PK24775.1 Cannabis sativa PK24775.1 N 0.937
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.905
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.905
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.905
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.905
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.898
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.889
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.881
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.865
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.857
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.849
mgf011722m Mimulus guttatus mgf011722m N 0.849
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.841
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.825
MDP0000583927 Malus x domestica MDP0000583927 N 0.812
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.810
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.810
ppa008562m Prunus persica ppa008562m N 0.805
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.802
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.794
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.794
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.794
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.775
PK11625.1 Cannabis sativa PK11625.1 N 0.773
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.770
mgf016209m Mimulus guttatus mgf016209m N 0.758
mgf013695m Mimulus guttatus mgf013695m N 0.758
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.746
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.730
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.709
SB04G001910 Sorghum bicolor Sb04g001910 N 0.703
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.701
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.701