B9IC71_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s07270 T45648_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s07270.1 RRM 4 65
POPTR_0014s07270.1 RRM 97 160

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.944
PK24775.1 Cannabis sativa PK24775.1 N 0.857
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.852
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.841
ppa005993m Prunus persica ppa005993m N 0.841
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.841
MDP0000288452 Malus x domestica MDP0000288452 N 0.833
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.825
MDP0000583927 Malus x domestica MDP0000583927 N 0.820
ppa008562m Prunus persica ppa008562m N 0.820
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.817
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.817
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.817
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.817
mgf011722m Mimulus guttatus mgf011722m N 0.817
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.817
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.817
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.810
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.806
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.794
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.786
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.786
mgf016209m Mimulus guttatus mgf016209m N 0.766
PK11625.1 Cannabis sativa PK11625.1 N 0.766
mgf013695m Mimulus guttatus mgf013695m N 0.766
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.762
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.762
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.762
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.724
SB04G001910 Sorghum bicolor Sb04g001910 N 0.719
mgf011632m Mimulus guttatus mgf011632m N 0.717
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.717
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.717
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.714
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.709
PK15848.1 Cannabis sativa PK15848.1 N 0.701