RS40 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT4G25500-TAIR-G T32788_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT4G25500.1-P RRM 4 65
AT4G25500.1-P RRM 99 162
AT4G25500.2-P RRM 1 24
AT4G25500.2-P RRM 58 121
AT4G25500.3-P RRM 1 32
AT4G25500.3-P RRM 66 129

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK11625.1 Cannabis sativa PK11625.1 N 0.750
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.722
Glyma03g01920.1 Glycine max Glyma03g01920.1 N 0.744
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.802
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.802
mgf011722m Mimulus guttatus mgf011722m N 0.802
mgf013695m Mimulus guttatus mgf013695m N 0.766
mgf014243m Mimulus guttatus mgf014243m N 0.714
mgf016209m Mimulus guttatus mgf016209m N 0.766
GRMZM2G121269 Zea mays GRMZM2G121269 N 0.703
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.810
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.786
MDP0000288452 Malus x domestica MDP0000288452 N 0.794
MDP0000583927 Malus x domestica MDP0000583927 N 0.742
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.802
ppa005993m Prunus persica ppa005993m N 0.802
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.797
cassava31734.valid.m1 Manihot esculenta cassava31734.valid.m1 N 0.792
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.802
PK24775.1 Cannabis sativa PK24775.1 N 0.794
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.937
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.770
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.762
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.968
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.913
GSVIVG00010623001 Vitis vinifera GSVIVG00010623001 N 0.750
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.792
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.770
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.810
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.762
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.810
30147.m014308 Ricinus communis 30147.m014308 N 0.807
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.802
ppa008562m Prunus persica ppa008562m N 0.766