SRSF9 (Dasypus novemcinctus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDNOG00000012598 T36346_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.992
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.992
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.992
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.776
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.776
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.776
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.776
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.776
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.776
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.776
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.776
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.776
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDNOP00000009772 RRM 16 83
ENSDNOP00000009772 RRM 113 176

Links

Other RRM family RBPs
Other Dasypus novemcinctus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM8A Homo sapiens ENSG00000131795 D 0.000
Q6PH90 Xenopus laevis Q6PH90 I 0.000
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.000
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.000
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.000
RBM8A Sus scrofa ENSSSCG00000006684 I 0.000
RBM8A Sorex araneus ENSSARG00000013289 I 0.000
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.000
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.000
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.000
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.000
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.000
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.000
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.000
AAH73361 Xenopus laevis AAH73361 I 0.000
AAH56659 Xenopus laevis AAH56659 I 0.000
AAG27092 Xenopus laevis AAG27092 I 0.000
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.000
estExt_Genewise1.C_210127 Daphnia pulex estExt_Genewise1.C_210127 I 0.000
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.000
estExt_fgenesh1_pg.C_1530030 Capitella teleta estExt_fgenesh1_pg.C_1530030 I 0.000
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.000
e_gw1.53.304.1 Lottia gigantea e_gw1.53.304.1 I 0.000
Q9DF42 Xenopus laevis Q9DF42 I 0.000
GI19803 Drosophila mojavensis FBgn0142540 I 0.000
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.000
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.000
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.000
CpipJ_CPIJ007339 Culex pipiens CpipJ_CPIJ007339 I 0.000
amel4_ncbi_hmm2170 Apis mellifera amel4_ncbi_hmm2170 I 0.000
DGIL_AUG5s13034g4t1 Acyrtosiphon pisum DGIL_AUG5s13034g4t1 I 0.000
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.000
DGIL_AUG5s25g7t1 Acyrtosiphon pisum DGIL_AUG5s25g7t1 I 0.000
AGAP006365 Anopheles gambiae AGAP006365 I 0.000
RBM8A Canis familiaris ENSCAFG00000023172 I 0.000
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.000
CJA17011 Caenorhabditis japonica CJA17011 I 0.000
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.000
rbm8a Danio rerio ENSDARG00000016516 I 0.000
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.000
Rbm8a Mus musculus ENSMUSG00000038374 I 0.000
RBM8A Monodelphis domestica ENSMODG00000018752 I 0.000
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.000
RBM8A Macropus eugenii ENSMEUG00000016058 I 0.000
CPIJ007339 Culex quinquefasciatus CPIJ007339 I 0.000
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.000
RBM8A Felis catus ENSFCAG00000005412 I 0.000
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.000
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.000
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.000
rnp-4 Caenorhabditis elegans R07E5.14 N 0.000
CBN21335 Caenorhabditis brenneri CBN21335 N 0.000
AAEL006748 Aedes aegypti AAEL006748 N 0.000
EuGene.0000060244 Micromonas pusilla EuGene.0000060244 N 0.000
gw.10.199.1 Nematostella vectensis gw.10.199.1 N 0.000
gw.617.10.1 Nematostella vectensis gw.617.10.1 N 0.000
e_gw.27.177.1 Nematostella vectensis e_gw.27.177.1 N 0.000
GA21317-RA Drosophila pseudoobscura FBgn0081305 N 0.000
GF11955 Drosophila ananassae FBgn0088994 N 0.000
GG23412 Drosophila erecta FBgn0115559 N 0.000
GL17620 Drosophila persimilis FBgn0155223 N 0.000
GM21093 Drosophila sechellia FBgn0175974 N 0.000
GD10630 Drosophila simulans FBgn0182397 N 0.000
GK23248 Drosophila willistoni FBgn0225210 N 0.000
GE19253 Drosophila yakuba FBgn0236606 N 0.000
PHUM390470 Pediculus humanus PHUM390470 N 0.000
e_gw1.136.78.1 Physcomitrella patens e_gw1.136.78.1 N 0.000
tsu Drosophila melanogaster FBgn0033378 N 0.000