CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6B
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000007421
T37454_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000009843
RRM
645
709
LLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTHGSALIRYSSRQEAAKAQGALHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
119 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
eu2.Lbscf0009g02580
Laccaria bicolor
eu2.Lbscf0009g02580
N
0.000
fgenesh1_pm.C_scaffold_10000130
Schizophyllum commune
fgenesh1_pm.C_scaffold_10000130
N
0.000
estExt_fgenesh1_pm.C_90075
Pleurotus ostreatus
estExt_fgenesh1_pm.C_90075
N
0.000
estExt_fgenesh2_kg.C_110090
Agaricus bisporus
estExt_fgenesh2_kg.C_110090
N
0.000
estExt_fgenesh2_kg.C_30783
Serpula lacrymans
estExt_fgenesh2_kg.C_30783
N
0.000