CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ALKBH8
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000000238
T42524_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000000222
RRM
50
108
GGLGNRVSRNQLLLVLEKCGLVDALLMPPNKPYSFVRYKTVEESKKAYDTLNGKEIVDD
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK05232.1
Cannabis sativa
PK05232.1
N
0.000
Cucsa.043980
Cucumis sativus
Cucsa.043980
N
0.000
e_gw1.234.40.1
Physcomitrella patens
e_gw1.234.40.1
N
0.000
Glyma01g36670.1
Glycine max
Glyma01g36670.1
N
0.000
Glyma02g04980.1
Glycine max
Glyma02g04980.1
N
0.000
Glyma16g23010.1
Glycine max
Glyma16g23010.1
N
0.000
gw1.21.172.1
Physcomitrella patens
gw1.21.172.1
N
0.000
gw1.27.117.1
Physcomitrella patens
gw1.27.117.1
N
0.000
gw1.3.275.1
Physcomitrella patens
gw1.3.275.1
N
0.000
mgf000980m
Mimulus guttatus
mgf000980m
N
0.000
mgf010666m
Mimulus guttatus
mgf010666m
N
0.000
mgf018316m
Mimulus guttatus
mgf018316m
N
0.000
Medtr5g023040
Medicago truncatula
Medtr5g023040
N
0.000
Medtr8g088990
Medicago truncatula
Medtr8g088990
N
0.000
MDP0000285029
Malus x domestica
MDP0000285029
N
0.000
PDK_20s1771821g002
Phoenix dactylifera
PDK_20s1771821g002
N
0.000
ppa010685m
Prunus persica
ppa010685m
N
0.000
cassava35282.valid.m1
Manihot esculenta
cassava35282.valid.m1
N
0.000
cassava28821.valid.m1
Manihot esculenta
cassava28821.valid.m1
N
0.000
PK15963.1
Cannabis sativa
PK15963.1
N
0.000
AT4G35785
Arabidopsis thaliana
AT4G35785-TAIR-G
N
0.000
BGIOSIBCE023334
Oryza indica
BGIOSIBCE023334
N
0.000
BGIOSIBSE038661
Oryza indica
BGIOSIBSE038661
N
0.000
GSVIVG00005197001
Vitis vinifera
GSVIVG00005197001
N
0.000
GSVIVG00019390001
Vitis vinifera
GSVIVG00019390001
N
0.000
LOC_Os06g50890
Oryza sativa
LOC_Os06g50890
N
0.000
LOC_Os08g29650
Oryza sativa
LOC_Os08g29650
N
0.000
B9GWT8_POPTR
Populus trichocarpa
POPTR_0003s13030
N
0.000
B9MX89_POPTR
Populus trichocarpa
POPTR_0005s10780
N
0.000
SB10G030460
Sorghum bicolor
Sb10g030460
N
0.000
XM_002867008.1
Arabidopsis lyrata
scaffold_700530.1
N
0.000
29784.m000370
Ricinus communis
29784.m000370
N
0.000
30190.m011248
Ricinus communis
30190.m011248
N
0.000
cassava28819.valid.m1
Manihot esculenta
cassava28819.valid.m1
N
0.000
cassava28820.valid.m1
Manihot esculenta
cassava28820.valid.m1
N
0.000
ppa011480m
Prunus persica
ppa011480m
N
0.000