elavl4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000008680 T42853_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.995
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.995
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.995
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.953
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.953
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.953
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.731
fne
M115_0.6 		Drosophila melanogaster UUKDGUU RNAcompete
Ray et al.(2013)
RNCMPT00120 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000018998 RRM 48 89
ENSXETP00000018998 RRM 108 147
ENSXETP00000018998 RRM 163 231
ENSXETP00000018998 RRM 314 384
ENSXETP00000019000 RRM 48 118
ENSXETP00000019000 RRM 134 202
ENSXETP00000019000 RRM 285 355

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

207 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fne Drosophila melanogaster FBgn0086675 D 0.709
DGIL_AUG5s1005g4t1 Acyrtosiphon pisum DGIL_AUG5s1005g4t1 I 0.716
GM11591 Drosophila sechellia FBgn0166534 I 0.000
GJ16518 Drosophila virilis FBgn0203702 I 0.704
GK25647 Drosophila willistoni FBgn0227606 I 0.704
GA22283-RA Drosophila pseudoobscura FBgn0243690 I 0.704
PHUM065370 Pediculus humanus PHUM065370 I 0.713
BGIBMGA013823 Bombyx mori BGIBMGA013823 I 0.000
AAH43735 Xenopus laevis AAH43735 I 0.995
AAH56021 Xenopus laevis AAH56021 I 0.995
GL22975 Drosophila persimilis FBgn0160565 I 0.704
GI16282 Drosophila mojavensis FBgn0139031 I 0.704
GH24423 Drosophila grimshawi FBgn0131879 I 0.704
AAEL006675 Aedes aegypti AAEL006675 I 0.714
AAEL008516 Aedes aegypti AAEL008516 I 0.000
AAEL010567 Aedes aegypti AAEL010567 I 0.000
AGAP009952 Anopheles gambiae AGAP009952 I 0.000
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.995
fne Drosophila yakuba FBgn0067971 I 0.704
GF21392 Drosophila ananassae FBgn0098394 I 0.709
Q7SZT7 Xenopus laevis Q7SZT7 I 0.995