GH12033 (Drosophila grimshawi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0119512 T43447_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.990
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0145939 RRM 95 169
FBpp0145939 RRM 209 279
FBpp0145939 RRM 341 402

Links

Other RRM family RBPs
Other Drosophila grimshawi RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
U2af50 Drosophila melanogaster FBgn0005411 D 0.990
U2AF2 Homo sapiens ENSG00000063244 D 0.788
GI14308 Drosophila mojavensis FBgn0137061 I 1.000
GG19328 Drosophila erecta FBgn0111532 I 0.990
GF19596 Drosophila ananassae FBgn0096603 I 0.990
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.990
AAH44032 Xenopus laevis AAH44032 I 0.788
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.788
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.788
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.793
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.769
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.781
GL15893 Drosophila persimilis FBgn0153497 I 0.990
GM13406 Drosophila sechellia FBgn0168337 I 0.990
GD24494 Drosophila simulans FBgn0195829 I 0.990
Smp_019690 Schistosoma mansoni Smp_019690 I 0.726
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.788
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.899
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.722
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.822
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.769
185543 Helobdella robusta 185543 I 0.725
PHUM460480 Pediculus humanus PHUM460480 I 0.875
GE15975 Drosophila yakuba FBgn0233531 I 0.990
GK10063 Drosophila willistoni FBgn0212078 I 0.990
GJ19364 Drosophila virilis FBgn0206507 I 0.938
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.769
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.788
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.788
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.788
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.793
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.918
CBG15152 Caenorhabditis briggsae CBG15152 I 0.711
AGAP002908 Anopheles gambiae AGAP002908 I 0.899
AAEL002818 Aedes aegypti AAEL002818 I 0.918
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.923
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.870
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.870
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.812
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.913
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.784
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.743
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.774
U2af2 Mus musculus ENSMUSG00000030435 I 0.788
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.788
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.788
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.781
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.769
LOC100050729 Equus caballus ENSECAG00000010110 I 0.788
u2af2a Danio rerio ENSDARG00000012505 I 0.764
u2af2b Danio rerio ENSDARG00000011740 I 0.760
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.727
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.788
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.918