B9GZI4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0003s09410 T45485_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s09410.1 RRM 10 76
POPTR_0003s09410.2 RRM 10 76

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK05006.1 Cannabis sativa PK05006.1 N 0.836
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.754
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.783
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.783
mgf007506m Mimulus guttatus mgf007506m N 0.791
mgf014593m Mimulus guttatus mgf014593m N 0.716
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.731
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.761
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.761
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.710
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.761
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.821
MDP0000177505 Malus x domestica MDP0000177505 N 0.731
MDP0000596287 Malus x domestica MDP0000596287 N 0.776
PDK_20s1330821g002 Phoenix dactylifera PDK_20s1330821g002 N 0.716
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.746
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.710
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.806
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.809
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.797
30073.m002271 Ricinus communis 30073.m002271 N 0.806
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.731
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.721
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.731
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.725
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.746
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.761
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.721
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.716
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.821
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.836
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.725
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.746
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.910
SB01G010170 Sorghum bicolor Sb01g010170 N 0.710
SB10G000940 Sorghum bicolor Sb10g000940 N 0.746
29682.m000595 Ricinus communis 29682.m000595 N 0.791
ppa024222m Prunus persica ppa024222m N 0.701