B9H3A7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0004s08540 T45496_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s08540.1 RRM 98 167
POPTR_0004s08540.2 RRM 105 174

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK16300.1 Cannabis sativa PK16300.1 N 0.857
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.729
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.843
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.700
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.700
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.843
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.886
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.886
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.886
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.843
mgf000319m Mimulus guttatus mgf000319m N 0.729
ppa009623m Prunus persica ppa009623m N 0.857
MDP0000299639 Malus x domestica MDP0000299639 N 0.829
MDP0000275263 Malus x domestica MDP0000275263 N 0.829
MDP0000202749 Malus x domestica MDP0000202749 N 0.857
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.829
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.829
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.743
mgf010207m Mimulus guttatus mgf010207m N 0.700
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.886
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.857
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.771
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.743
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.700
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.729
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.714
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.700
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.771
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.771
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.700
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.829
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.857
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.857
29005.m000257 Ricinus communis 29005.m000257 N 0.900
SB07G020860 Sorghum bicolor Sb07g020860 N 0.743
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.914
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.729
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.714
ppa010358m Prunus persica ppa010358m N 0.700