cassava18809.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava18809.valid.m1 T49159_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18809.valid.m1 RRM 77 146
cassava18809.valid.m1 RRM 169 238

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK03611.1 Cannabis sativa PK03611.1 N 0.771
MDP0000709988 Malus x domestica MDP0000709988 N 0.700
MDP0000596919 Malus x domestica MDP0000596919 N 0.714
MDP0000250519 Malus x domestica MDP0000250519 N 0.707
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.707
mgf018937m Mimulus guttatus mgf018937m N 0.718
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.700
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.714
cassava28996.valid.m1 Manihot esculenta cassava28996.valid.m1 N 0.936
cassava28995.valid.m1 Manihot esculenta cassava28995.valid.m1 N 0.936
cassava28994.valid.m1 Manihot esculenta cassava28994.valid.m1 N 0.936
29900.m001607 Ricinus communis 29900.m001607 N 0.900
B9I1M7_POPTR Populus trichocarpa POPTR_0011s07480 N 0.807
B9H2J4_POPTR Populus trichocarpa POPTR_0004s05450 N 0.793
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.721
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.700
ppa005857m Prunus persica ppa005857m N 0.707