cassava18809.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava18809.valid.m1 T49159_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18809.valid.m1 RRM 77 146
cassava18809.valid.m1 RRM 169 238

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_002158002.1 Hydra magnipapillata XP_002158002.1 N 0.000
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.000
CMU_000450 Cryptosporidium muris CMU_000450 N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
THAPSDRAFT_268598 Thalassiosira pseudonana Thaps268598 N 0.000
KRR1 Vicugna pacos ENSVPAG00000011750 N 0.000
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.000
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.000
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.000
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.000
KRR1 Sus scrofa ENSSSCG00000000520 N 0.000
KRR1 Sorex araneus ENSSARG00000009967 N 0.000
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.000
GSPATP00022892001 Paramecium tetraurelia GSPATP00022892001 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.000
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.000
KRR1 Procavia capensis ENSPCAG00000010269 N 0.000
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.000
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.000
PK22510.1 Cannabis sativa PK22510.1 N 0.000
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
KRR1 Candida albicans orf19.661 N 0.000
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
CTRG_04103 Candida tropicalis CTRG_04103 N 0.000
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.000
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.000
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.000
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.000
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.000
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.000
KRR1 Microcebus murinus ENSMICG00000015127 N 0.000
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.000
KRR1 Homo sapiens ENSG00000111615 N 0.000
KRR1 Felis catus ENSFCAG00000005207 N 0.000
ENSETEG00000001656 Echinops telfairi ENSETEG00000001656 N 0.000
LOC100050169 Equus caballus ENSECAG00000017498 N 0.000
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.000
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.000
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000