CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9GGV7_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0001s38640
T45444_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s38640.1
RRM
77
146
LFIRGLGWETTTENLRNLFSTYGELEEAVVILDKNTGKSKGYGFVIYKHVDGALLALKEPSKKIDGRVTV
POPTR_0001s38640.1
RRM
177
246
IYVANVPYEMPSDKLLNHFAQYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALLEPVKMIEGRQLN
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK28408.1
Cannabis sativa
PK28408.1
N
0.850
MDP0000250519
Malus x domestica
MDP0000250519
N
0.843
ppa005857m
Prunus persica
ppa005857m
N
0.836
MDP0000596919
Malus x domestica
MDP0000596919
N
0.836
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.821
Glyma06g33940.1
Glycine max
Glyma06g33940.1
N
0.814
MDP0000575061
Malus x domestica
MDP0000575061
N
0.807
MDP0000410930
Malus x domestica
MDP0000410930
N
0.807
Glyma12g19050.1
Glycine max
Glyma12g19050.1
N
0.807
AT3G15010
Arabidopsis thaliana
AT3G15010-TAIR-G
N
0.800
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.793
XM_002894385.1
Arabidopsis lyrata
scaffold_105150.1
N
0.786
XM_002882862.1
Arabidopsis lyrata
fgenesh2_kg.3__1628__AT3G15010.2
N
0.786
mgf018937m
Mimulus guttatus
mgf018937m
N
0.782
PK03611.1
Cannabis sativa
PK03611.1
N
0.736
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.736
29900.m001607
Ricinus communis
29900.m001607
N
0.736
GRMZM2G117715
Zea mays
GRMZM2G117715
N
0.729
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.729
cassava18809.valid.m1
Manihot esculenta
cassava18809.valid.m1
N
0.721
LOC_Os01g42820
Oryza sativa
LOC_Os01g42820
N
0.721
cassava28994.valid.m1
Manihot esculenta
cassava28994.valid.m1
N
0.721
cassava28995.valid.m1
Manihot esculenta
cassava28995.valid.m1
N
0.721
cassava28996.valid.m1
Manihot esculenta
cassava28996.valid.m1
N
0.721
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.714
MDP0000709988
Malus x domestica
MDP0000709988
N
0.700