estExt_Genewise1.C_sca_90322 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_sca_90322 T51333_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_90322 RRM 40 108
estExt_Genewise1.C_sca_90322 RRM 137 207
estExt_Genewise1.C_sca_90322 RRM 321 378

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77813 Xenopus laevis AAH77813 N 0.763
GF14957 Drosophila ananassae FBgn0091982 N 0.749
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.764
CG11266 Drosophila melanogaster FBgn0031883 N 0.754
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.768
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.768
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.768
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.763
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.763
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.763
RBM39 Sus scrofa ENSSSCG00000007309 N 0.768
RBM39 Sorex araneus ENSSARG00000007673 N 0.768
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.768
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.768
GG10454 Drosophila erecta FBgn0102763 N 0.754
GH13506 Drosophila grimshawi FBgn0120982 N 0.755
GI10246 Drosophila mojavensis FBgn0133011 N 0.745
AAH75146 Xenopus laevis AAH75146 N 0.742
Smp_064590 Schistosoma mansoni Smp_064590 N 0.730
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.768
Sjc_0034270 Schistosoma japonicum Sjc_0034270 N 0.730
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.749
114532 Helobdella robusta 114532 N 0.709
109933 Helobdella robusta 109933 N 0.714
PHUM394230 Pediculus humanus PHUM394230 N 0.785
GE14328 Drosophila yakuba FBgn0231943 N 0.749
GK15272 Drosophila willistoni FBgn0217277 N 0.755
GJ18017 Drosophila virilis FBgn0205182 N 0.736
GD23448 Drosophila simulans FBgn0194830 N 0.754
GM16278 Drosophila sechellia FBgn0171194 N 0.754
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.768
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.768
RBM39 Procavia capensis ENSPCAG00000008764 N 0.702
rbm39b Danio rerio ENSDARG00000041853 N 0.747
rbm39a Danio rerio ENSDARG00000011613 N 0.768
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.768
RBM39 Canis familiaris ENSCAFG00000008327 N 0.768
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.768
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.763
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.774
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.774
AGAP008433 Anopheles gambiae AGAP008433 N 0.755
AAEL005046 Aedes aegypti AAEL005046 N 0.776
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.780
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.780
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.774
RBM39 Equus caballus ENSECAG00000013423 N 0.768
RBM39 Echinops telfairi ENSETEG00000016295 N 0.702
RBM39 Homo sapiens ENSG00000131051 N 0.768
RBM23 Oryzias latipes ENSORLG00000010370 N 0.763
RBM23 Oryzias latipes ENSORLG00000009919 N 0.753
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.717
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.768
Rbm39 Mus musculus ENSMUSG00000027620 N 0.768
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.760
RBM39 Microcebus murinus ENSMICG00000001668 N 0.768
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.758
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.768
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.753
RBM39 Gallus gallus ENSGALG00000001550 N 0.763
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.727
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.738
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.774