PredSwiss_CON682.3 (Pneumocystis carinii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PredSwiss_CON682.3 T54726_0.6 Pneumocystis Genome Project (2010-Oct-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON682.3 RRM 33 107

Links

Other RRM family RBPs
Other Pneumocystis carinii RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.733
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.773
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.747
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.800
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.720
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.787
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.787
PHUM535920 Pediculus humanus PHUM535920 N 0.733
NCU00210 Neurospora crassa NCU00210 N 0.747
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.733
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.707
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.747
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.760
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.773
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.747
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.747
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.760
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.733
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.733
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.747
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 1.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.707
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.773
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.760
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.707
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.747
An12g03930 Aspergillus niger CADANGAG00009835 N 0.733
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.747
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.747
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.747
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.773
MCYG_04468 Microsporum canis MCYG_04468 N 0.747
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.747
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.787
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.747
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.733
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.747
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.747
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.707
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.747
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.747
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.773
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.773
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.707
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.707
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.760
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.760
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.747
TERG_03424 Trichophyton rubrum TERG_03424 N 0.747
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.747
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.773
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.773
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.707
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.720
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.773