VDBG_06810 (Verticillium albo atrum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 VDBG_06810 T31470_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDBG_06810T0 RRM 52 122

Links

Other RRM family RBPs
Other Verticillium albo atrum RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
VDAG_05874 Verticillium dahliae VDAG_05874 N 1.000
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.972
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.972
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.958
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.958
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.958
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.944
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.944
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.944
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.930
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.930
MCYG_04468 Microsporum canis MCYG_04468 N 0.930
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.930
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.930
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.930
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.930
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.930
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.930
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.930
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.930
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.930
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.930
NCU00210 Neurospora crassa NCU00210 N 0.930
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.930
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.930
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.930
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.930
TERG_03424 Trichophyton rubrum TERG_03424 N 0.930
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.930
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.930
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.930
An12g03930 Aspergillus niger CADANGAG00009835 N 0.915
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.915
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.915
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.915
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.901
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.901
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.873
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.873
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.861
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.861
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.817
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.817
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.817
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.817
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.775
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.761
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.761
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.761
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.761
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.761
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.760
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.760
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.746
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732
PHUM535920 Pediculus humanus PHUM535920 N 0.732
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.718
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.718
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.718
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.718
PGTG_01720 Puccinia graminis PGTG_01720 N 0.718
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.718
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.718
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.718
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.714
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.704
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.704