fgeneshMC_pm.5_#_40 (Mucor circinelloides)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshMC_pm.5_#_40 T52444_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshMC_pm.5_#_40 RRM 36 106

Links

Other RRM family RBPs
Other Mucor circinelloides RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.930
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.845
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.845
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.845
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.845
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.845
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.845
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.845
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.845
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.831
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.831
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.831
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.831
TERG_03424 Trichophyton rubrum TERG_03424 N 0.831
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.831
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.831
NCU00210 Neurospora crassa NCU00210 N 0.831
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.831
MCYG_04468 Microsporum canis MCYG_04468 N 0.831
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.831
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.831
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.817
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.817
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.817
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.817
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.817
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.817
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.817
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.817
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.817
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.817
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.817
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.817
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.817
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.817
An12g03930 Aspergillus niger CADANGAG00009835 N 0.803
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.803
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.803
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.803
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.803
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.803
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.803
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.803
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.803
PHUM535920 Pediculus humanus PHUM535920 N 0.789
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.789
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.789
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.789
PGTG_01720 Puccinia graminis PGTG_01720 N 0.789
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.789
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.775
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.775
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.761
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.761
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.747
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.747
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.746
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.746
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.746
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.740
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.732
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.732
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.732
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.732
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.732
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.732
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.732
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.732
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.732
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.732
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.732
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.732
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.732
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.732
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.732
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.732
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.732
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.732
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.732
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.732
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.732
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.732
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.732
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.732
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.732
NCBP2 Equus caballus ENSECAG00000016153 N 0.732
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.732
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.732
NCBP2 Homo sapiens ENSG00000114503 N 0.732
NCBP2 Gallus gallus ENSGALG00000006843 N 0.732
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.727
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.722
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.718
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.718
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.718
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.718
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.718
LOAG_03270 Loa loa LOAG_03270 N 0.718
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.718
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.718
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.718
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.718
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.718
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.718
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.718
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.718
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.714
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.714
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.714
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.708
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.704
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.704
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.704
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.704
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.704
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.704
Minc02990 Meloidogyne incognita Minc02990 N 0.704
SB04G025800 Sorghum bicolor Sb04g025800 N 0.704
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.704
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.704
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.704
Minc06129 Meloidogyne incognita Minc06129 N 0.704
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.704
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.701