SS1G_13629 (Sclerotinia sclerotiorum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SS1G_13629 T31004_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SS1T_13629 RRM 55 125

Links

Other RRM family RBPs
Other Sclerotinia sclerotiorum RBPs

134 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_04395 Botrytis cinerea BC1G_04395 N 1.000
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.972
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.972
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.972
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.972
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.972
TERG_03424 Trichophyton rubrum TERG_03424 N 0.972
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.972
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.972
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.972
MCYG_04468 Microsporum canis MCYG_04468 N 0.972
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.958
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.958
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.958
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.958
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.958
An12g03930 Aspergillus niger CADANGAG00009835 N 0.958
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.944
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.944
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.944
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.944
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.944
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.944
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.944
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.944
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.944
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.944
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.930
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.930
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.930
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.930
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.930
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.915
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.915
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.915
NCU00210 Neurospora crassa NCU00210 N 0.915
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.915
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.915
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.915
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.859
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.859
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.847
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.847
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.831
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.831
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.803
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.789
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.789
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.775
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.775
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.775
PHUM535920 Pediculus humanus PHUM535920 N 0.775
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.775
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.775
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.775
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.773
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.773
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.761
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.761
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.761
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.761
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.753
PGTG_01720 Puccinia graminis PGTG_01720 N 0.746
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.746
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.746
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.732
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.732
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.732
NCBP2 Gallus gallus ENSGALG00000006843 N 0.732
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.732
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.732
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.732
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.732
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.727
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.727
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.718
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.718
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.718
NCBP2 Homo sapiens ENSG00000114503 N 0.718
LOAG_03270 Loa loa LOAG_03270 N 0.718
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.718
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.718
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.718
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.718
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.718
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.718
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.718
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.718
NCBP2 Equus caballus ENSECAG00000016153 N 0.718
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.718
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.718
ncbp2 Danio rerio ENSDARG00000014898 N 0.718
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.718
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.718
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.718
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.718
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.718
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.718
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.718
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.718
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.718
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.718
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.718
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.718
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.718
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.718
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.714
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.714
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.714
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.704
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.704
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.704
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.704
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.704
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.704
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.704
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.704
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.704
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.704
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.704
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.704
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.704
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.704
AAH72902 Xenopus laevis AAH72902 N 0.704
CAA59259 Xenopus laevis CAA59259 N 0.704
P52299 Xenopus laevis P52299 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.704
2118330B Xenopus laevis 2118330B N 0.704
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.704
KLTH0H05214g Kluyveromyces thermotolerans KLTH0H05214g N 0.704
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.704
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.701