gw1.29.143.1 (Phycomyces blakesleeanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.29.143.1 T53205_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.29.143.1 RRM 9 79

Links

Other RRM family RBPs
Other Phycomyces blakesleeanus RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.930
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.859
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.859
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.859
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.859
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.859
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.859
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.859
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.859
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.859
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.845
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.845
NCU00210 Neurospora crassa NCU00210 N 0.845
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.845
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.831
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.831
MCYG_04468 Microsporum canis MCYG_04468 N 0.831
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.831
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.831
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.831
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.831
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.831
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.831
TERG_03424 Trichophyton rubrum TERG_03424 N 0.831
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.817
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.817
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.817
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.817
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.817
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.817
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.817
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.817
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.817
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.817
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.817
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.817
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.817
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.817
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.817
An12g03930 Aspergillus niger CADANGAG00009835 N 0.803
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.803
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.803
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.803
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.803
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.803
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.789
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.789
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.789
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.789
PHUM535920 Pediculus humanus PHUM535920 N 0.789
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.775
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.775
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.775
PGTG_01720 Puccinia graminis PGTG_01720 N 0.775
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.761
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.761
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.760
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.760
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.746
NCBP2 Homo sapiens ENSG00000114503 N 0.746
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.746
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.746
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.746
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.746
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.746
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.746
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.746
NCBP2 Equus caballus ENSECAG00000016153 N 0.746
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.746
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.746
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.746
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.746
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.746
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.746
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.746
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.746
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.746
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.746
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.746
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.746
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.746
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.746
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.746
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.746
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.746
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.740
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.736
LOAG_03270 Loa loa LOAG_03270 N 0.732
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.732
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.732
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.732
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.732
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.732
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.732
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.732
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.732
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.732
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.732
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.732
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.732
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.732
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.727
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.727
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.727
NCBP2 Gallus gallus ENSGALG00000006843 N 0.718
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.718
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.718
Bm1_02935 Brugia malayi Bm1_02935 N 0.718
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.718
SB04G025800 Sorghum bicolor Sb04g025800 N 0.718
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.718
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.718
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.718
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.718
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.718
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.718
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.718
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.718
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.718
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.714
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.708
KLTH0H05214g Kluyveromyces thermotolerans KLTH0H05214g N 0.704
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.704
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.704
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.704
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.704
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.704
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.704
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.704
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.704
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.704
PK11911.1 Cannabis sativa PK11911.1 N 0.704
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.704
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.704
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.704
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.704
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.704
91084 Helobdella robusta 91084 N 0.704
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.704
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.704
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.704
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.704
ncbp2 Danio rerio ENSDARG00000014898 N 0.704
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.704
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.701
UM04861 Ustilago maydis UM04861 N 0.701
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.701