CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1613681g001
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1613681g001
T58200_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1613681g001
RRM
8
74
VKVSNLSLTASEQDVKEFFSFSGDIEYVEMRSGDEWSQIAYVTFKDSEGAETALLLSGATIVDLSVI
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK05006.1
Cannabis sativa
PK05006.1
N
0.791
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.739
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.768
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.725
mgf007506m
Mimulus guttatus
mgf007506m
N
0.761
mgf014593m
Mimulus guttatus
mgf014593m
N
0.746
GRMZM2G051890
Zea mays
GRMZM2G051890
N
0.821
GRMZM2G102808
Zea mays
GRMZM2G102808
N
0.851
GRMZM2G114789
Zea mays
GRMZM2G114789
N
0.746
GRMZM2G127559
Zea mays
GRMZM2G127559
N
0.725
Medtr5g029540
Medicago truncatula
Medtr5g029540
N
0.776
Medtr8g077770
Medicago truncatula
Medtr8g077770
N
0.806
MDP0000177505
Malus x domestica
MDP0000177505
N
0.701
MDP0000596287
Malus x domestica
MDP0000596287
N
0.776
PDK_20s1330821g002
Phoenix dactylifera
PDK_20s1330821g002
N
0.731
PDK_20s1346002g005
Phoenix dactylifera
PDK_20s1346002g005
N
0.821
cassava25245.valid.m1
Manihot esculenta
cassava25245.valid.m1
N
0.735
cassava25244.valid.m1
Manihot esculenta
cassava25244.valid.m1
N
0.725
30073.m002271
Ricinus communis
30073.m002271
N
0.761
BGIOSIBCE012743
Oryza indica
BGIOSIBCE012743
N
0.725
BGIOSIBCE016670
Oryza indica
BGIOSIBCE016670
N
0.716
BGIOSIBCE020376
Oryza indica
BGIOSIBCE020376
N
0.836
BRADI1G10760
Brachypodium distachyon
BRADI1G10760
N
0.710
BRADI1G51740
Brachypodium distachyon
BRADI1G51740
N
0.851
GSVIVG00013098001
Vitis vinifera
GSVIVG00013098001
N
0.791
GSVIVG00024381001
Vitis vinifera
GSVIVG00024381001
N
0.806
LOC_Os03g50560
Oryza sativa
LOC_Os03g50560
N
0.725
LOC_Os04g53330
Oryza sativa
LOC_Os04g53330
N
0.716
LOC_Os06g02240
Oryza sativa
LOC_Os06g02240
N
0.836
A9PE83_POPTR
Populus trichocarpa
POPTR_0001s02090
N
0.821
B9GZI4_POPTR
Populus trichocarpa
POPTR_0003s09410
N
0.806
SB01G010170
Sorghum bicolor
Sb01g010170
N
0.725
SB10G000940
Sorghum bicolor
Sb10g000940
N
0.836
29682.m000595
Ricinus communis
29682.m000595
N
0.791
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.710