gw.38.22.1 (Branchiostoma floridae)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		gw.38.22.1 T00983_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw.38.22.1 CCCH ZF 163 185
gw.38.22.1 RRM 234 299

Links

Other CCCH ZF,RRM family RBPs
Other Branchiostoma floridae RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH45067 Xenopus laevis AAH45067 N 0.778
amel4_ncbi_hmm34588 Apis mellifera amel4_ncbi_hmm34588 N 0.820
ENSCHOG00000001041 Choloepus hoffmanni ENSCHOG00000001041 N 0.800
ENSCHOG00000004192 Choloepus hoffmanni ENSCHOG00000004192 N 0.811
ENSCHOG00000013522 Choloepus hoffmanni ENSCHOG00000013522 N 0.811
ENSEEUG00000005638 Erinaceus europaeus ENSEEUG00000005638 N 0.811
ENSMEUG00000009348 Macropus eugenii ENSMEUG00000009348 N 0.753
ENSMLUG00000003461 Myotis lucifugus ENSMLUG00000003461 N 0.800
ENSMODG00000006398 Monodelphis domestica ENSMODG00000006398 N 0.789
ENSOPRG00000008481 Ochotona princeps ENSOPRG00000008481 N 0.811
ENSPPYG00000015955 Pongo pygmaeus ENSPPYG00000015955 N 0.811
estExt_fgenesh2_pm.C_1790010 Branchiostoma floridae estExt_fgenesh2_pm.C_1790010 N 1.000
e_gw1.11.24.1 Lottia gigantea e_gw1.11.24.1 N 0.730
e_gw1.462.21.1 Capitella teleta e_gw1.462.21.1 N 0.733
gw.351.5.1 Nematostella vectensis gw.351.5.1 N 0.787
ISCW021094 Ixodes scapularis ISCW021094 N 0.787
PHUM268310 Pediculus humanus PHUM268310 N 0.787
Q7ZXB5 Xenopus laevis Q7ZXB5 N 0.778
RBM22 Pan troglodytes ENSPTRG00000017423 N 0.811
RBM22 Pteropus vampyrus ENSPVAG00000014231 N 0.811
Rbm22 Rattus norvegicus ENSRNOG00000019235 N 0.800
RBM22 Taeniopygia guttata ENSTGUG00000000850 N 0.811
Rbm22 Dipodomys ordii ENSDORG00000005329 N 0.811
RBM22 Tursiops truncatus ENSTTRG00000012778 N 0.811
RBM22 Vicugna pacos ENSVPAG00000002066 N 0.000
rbm22 Xenopus tropicalis ENSXETG00000020435 N 0.800
RBM22 Anolis carolinensis ENSACAG00000014750 N 0.811
Rbm22 Mus musculus ENSMUSG00000024604 N 0.811
RBM22 Procavia capensis ENSPCAG00000015091 N 0.811
RBM22 Oryzias latipes ENSORLG00000004975 N 0.820
RBM22 Dasypus novemcinctus ENSDNOG00000011166 N 0.811
RBM22 Homo sapiens ENSG00000086589 N 0.811
RBM22 Gasterosteus aculeatus ENSGACG00000018027 N 0.820
RBM22 Gorilla gorilla ENSGGOG00000012947 N 0.811
RBM22 Loxodonta africana ENSLAFG00000006638 N 0.811
RBM22 Danio rerio ENSDARG00000010238 N 0.809
RBM22 Meleagris gallopavo ENSMGAG00000006298 N 0.811
RBM22 Cavia porcellus ENSCPOG00000001946 N 0.811
RBM22 Macaca mulatta ENSMMUG00000020683 N 0.811
RBM22 Callithrix jacchus ENSCJAG00000020963 N 0.811
RBM22 Monodelphis domestica ENSMODG00000009574 N 0.811
RBM22 Canis familiaris ENSCAFG00000018082 N 0.811
RBM22 Ornithorhynchus anatinus ENSOANG00000002314 N 0.772
RBM22 Oryctolagus cuniculus ENSOCUG00000011532 N 0.811
RBM22 Takifugu rubripes ENSTRUG00000004724 N 0.820
RBM22_BOVIN Bos taurus ENSBTAG00000030366 N 0.811
RBM22_CHICK Gallus gallus ENSGALG00000004555 N 0.811