CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PITG_04608
(
Phytophthora infestans
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PITG_04608
T01508_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_04608T0
CCCH ZF
241
266
PKSVLCAFFKAGVCTKGNRCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Phytophthora infestans
RBPs
129 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_024590
Aspergillus clavatus
CADACLAG00002524
N
0.000
ANIA_01188
Aspergillus nidulans
CADANIAG00001437
N
0.000
ARB_02854
Arthroderma benhamiae
ARB_02854
N
0.000
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.000
MGYG_04491
Microsporum gypseum
MGYG_04491
N
0.000
PABG_00485
Paracoccidioides brasiliensis
PABG_00485
N
0.000
SS1G_06737
Sclerotinia sclerotiorum
SS1G_06737
N
0.000
TERG_07903
Trichophyton rubrum
TERG_07903
N
0.000
TESG_05610
Trichophyton tonsurans
TESG_05610
N
0.000
UREG_05919
Uncinocarpus reesii
UREG_05919
N
0.000