MBNL3 (Oryctolagus cuniculus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSOCUG00000014979 T03060_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.891
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.891
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000012871 CCCH ZF 17 41
ENSOCUP00000012871 CCCH ZF 58 73
ENSOCUP00000012871 CCCH ZF 175 201
ENSOCUP00000012871 CCCH ZF 212 235
ENSOCUP00000015512 CCCH ZF 17 41
ENSOCUP00000015512 CCCH ZF 58 73
ENSOCUP00000015512 CCCH ZF 175 201
ENSOCUP00000015512 CCCH ZF 212 235
ENSOCUP00000021275 CCCH ZF 17 41
ENSOCUP00000021275 CCCH ZF 58 73
ENSOCUP00000021275 CCCH ZF 175 201
ENSOCUP00000021275 CCCH ZF 212 235

Links

Other CCCH ZF family RBPs
Other Oryctolagus cuniculus RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.880
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.935
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.870
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.870
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.957
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.848
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.880
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.880
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.870
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.891
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.989
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.848
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.859
LOC100050018 Equus caballus ENSECAG00000024349 I 0.891
LOC100054316 Equus caballus ENSECAG00000021076 I 0.978
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.891
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.978
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.870
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.880
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.870
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.870
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.891
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.891
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.891
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.891
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.880
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.891
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.891
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.719
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.859
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.891
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.902
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.891
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.891
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.891
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.891
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.891
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.891
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.891
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.891
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.891
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.891
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.880
MBNL1 Homo sapiens ENSG00000152601 D 0.891
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.859
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.891
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.891
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.880
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.870
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.870
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.891
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.870
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.870
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.870
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.870
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.880
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.826
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.870
MBNL2 Sorex araneus ENSSARG00000002868 I 0.870
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.859
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.870
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.870
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.859
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.870
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.804
mbnl2 Danio rerio ENSDARG00000018460 I 0.880
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.880
MBNL2 Homo sapiens ENSG00000139793 I 0.870
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.826
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.859
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.848
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.870
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.870
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.870
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.870
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.880
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.859
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.870
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.870
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.870
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.870
MBNL3 Homo sapiens ENSG00000076770 I 0.989
MBNL3 Sorex araneus ENSSARG00000006397 I 0.967
MBNL3 Bos taurus ENSBTAG00000014088 I 0.978
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.946
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.935
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.957
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.935
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.978
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.967
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.978
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.891
mbnl3 Danio rerio ENSDARG00000016085 I 0.880
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.891
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.848
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.935
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.924
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.935
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.989
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.978
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.935
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.884
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.887
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.935
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.978
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.935
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.989
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.935
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.989
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.891
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.763