CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL3
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000014979
T03060_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.891
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.891
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000012871
CCCH ZF
17
41
LEVCREFQRGTCSRADTDCKFAHPP
ENSOCUP00000012871
CCCH ZF
58
73
LKGRCTRENCKYLHPP
ENSOCUP00000012871
CCCH ZF
175
201
DKLEVCREFQRGNCTRGENDCRYAHPT
ENSOCUP00000012871
CCCH ZF
212
235
TVTICMDYIKGRCSREKCKYFHPP
ENSOCUP00000015512
CCCH ZF
17
41
LEVCREFQRGTCSRADTDCKFAHPP
ENSOCUP00000015512
CCCH ZF
58
73
LKGRCTRENCKYLHPP
ENSOCUP00000015512
CCCH ZF
175
201
DKLEVCREFQRGNCTRGENDCRYAHPT
ENSOCUP00000015512
CCCH ZF
212
235
TVTICMDYIKGRCSREKCKYFHPP
ENSOCUP00000021275
CCCH ZF
17
41
LEVCREFQRGTCSRADTDCKFAHPP
ENSOCUP00000021275
CCCH ZF
58
73
LKGRCTRENCKYLHPP
ENSOCUP00000021275
CCCH ZF
175
201
DKLEVCREFQRGNCTRGENDCRYAHPT
ENSOCUP00000021275
CCCH ZF
212
235
TVTICMDYIKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000
PTTG_08330
Puccinia triticina
PTTG_08330
N
0.000
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.000
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.000
PTTG_10552
Puccinia triticina
PTTG_10552
N
0.000
PTTG_11068
Puccinia triticina
PTTG_11068
N
0.000
PTTG_11563
Puccinia triticina
PTTG_11563
N
0.000