ZFP36L1 (Sus scrofa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSSSCG00000002302 T03365_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000002499 CCCH ZF 93 119
ENSSSCP00000002499 CCCH ZF 131 157

Links

Other CCCH ZF family RBPs
Other Sus scrofa RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.704
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 1.000
AAD24207 Xenopus laevis AAD24207 I 0.704
AAD24208 Xenopus laevis AAD24208 I 0.981
AAD24209 Xenopus laevis AAD24209 I 0.963
AAEL002308 Aedes aegypti AAEL002308 I 0.889
AAH44086 Xenopus laevis AAH44086 I 0.944
AAH82435 Xenopus laevis AAH82435 I 0.704
AAH84197 Xenopus laevis AAH84197 I 0.981
AAH84221 Xenopus laevis AAH84221 I 0.963
AAI00163 Xenopus laevis AAI00163 I 0.981
AAI08849 Xenopus laevis AAI08849 I 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.926
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.926
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 1.000
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.759
BAC54909 Xenopus laevis BAC54909 I 0.963
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.889
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.870
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.889
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.889
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 1.000
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.722
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.907
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.741
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.870
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.852
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 1.000
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.722
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.926
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.926
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.870
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.852
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.944
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.000
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.944
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.926
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.000
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.722
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.889
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 1.000
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.926
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.722
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 1.000
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.889
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.926
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.907
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.944
Q805B4 Xenopus laevis Q805B4 I 0.963
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 1.000
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.926
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.926
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.926
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.926
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 1.000
ZFP36 Homo sapiens ENSG00000128016 D 0.722
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.722
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.722
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.815
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.704
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.741
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.815
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.722
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.704
ZFP36 Canis familiaris ENSCAFG00000005530 I 0.000
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.704
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.722
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.722
Zfp36 Mus musculus ENSMUSG00000044786 I 0.704
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.704
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.722
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.722
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.722
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 1.000
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.981
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 1.000
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.963
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.981
ZFP36L1 Homo sapiens ENSG00000185650 I 1.000
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 1.000
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 1.000
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 1.000
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 1.000
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 1.000
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 1.000
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.981
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 1.000
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.981
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 1.000
Zfp36l1 Mus musculus ENSMUSG00000021127 I 1.000
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 1.000
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 1.000
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.963
zfp36l1a Danio rerio ENSDARG00000016154 I 1.000
zfp36l1b Danio rerio ENSDARG00000021443 I 0.926
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.926
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.926
zfp36l2 Danio rerio ENSDARG00000021806 I 0.926
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.907
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.944
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.926
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.926
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.963
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.926
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.944
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.907
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.926
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.926
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.926
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.926
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.926
ZFP36L2 Homo sapiens ENSG00000152518 I 0.926
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.944
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.926
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.926
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.926
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.926
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.833
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.833
zgc:114130 Danio rerio ENSDARG00000040725 I 0.815