AAI08849 (Xenopus laevis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AAI08849 T06713_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.852
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.852
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.852
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.852
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.852
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.852
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.852
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.852
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI08849 CCCH ZF 104 130
AAI08849 CCCH ZF 142 168

Links

Other CCCH ZF family RBPs
Other Xenopus laevis RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH82435 Xenopus laevis AAH82435 I 1.000
AAD24207 Xenopus laevis AAD24207 I 1.000
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.981
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.889
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.852
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.852
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.852
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.852
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.852
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.852
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.852
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.852
ZFP36 Homo sapiens ENSG00000128016 D 0.852
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.852
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.852
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.852
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.852
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.852
Zfp36 Mus musculus ENSMUSG00000044786 I 0.833
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.833
ZFP36 Canis familiaris ENSCAFG00000005530 I 0.778
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.759
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.759
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.741
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.741
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.741
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.741
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.722
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.722
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.722
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.722
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.722
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.722
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.722
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.722
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.722
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.722
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.722
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.722
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.722
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.722
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.722
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.722
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.722
zfp36l1b Danio rerio ENSDARG00000021443 I 0.722
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.722
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.722
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.722
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.722
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.722
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.722
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.722
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.722
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.722
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.722
ZFP36L2 Homo sapiens ENSG00000152518 I 0.722
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.722
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.722
AAH84197 Xenopus laevis AAH84197 I 0.704
AAI00163 Xenopus laevis AAI00163 I 0.704
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.704
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.704
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.704
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.704
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.704
AAH84221 Xenopus laevis AAH84221 I 0.704
AAD24209 Xenopus laevis AAD24209 I 0.704
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.704
EDI_287240 Entamoeba dispar EDI_287240 N 0.704
EHI_008770 Entamoeba histolytica EHI_008770 N 0.704
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.704
EIN_295900 Entamoeba invadens EIN_295900 N 0.704
AAD24208 Xenopus laevis AAD24208 I 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.704
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.704
zfp36l1a Danio rerio ENSDARG00000016154 I 0.704
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.704
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 0.704
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.704
ZFP36L1 Homo sapiens ENSG00000185650 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.704
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.704
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.704
Q805B4 Xenopus laevis Q805B4 I 0.704
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.704
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.704
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.704
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.704
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.704
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.704
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.704
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.704
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.704
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.704
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.704
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.704
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.704
BAC54909 Xenopus laevis BAC54909 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.704
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.704
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.704
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.704
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.704