CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mbnl1
(
Xenopus tropicalis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSXETG00000021655
T03649_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.989
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.989
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000046798
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046798
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSXETP00000046798
CCCH ZF
179
205
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046798
CCCH ZF
216
239
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000046799
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046799
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSXETP00000046799
CCCH ZF
179
205
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046799
CCCH ZF
216
239
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000046801
CCCH ZF
18
42
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046801
CCCH ZF
59
74
LKGRCSRENCKYLHPP
ENSXETP00000046801
CCCH ZF
181
207
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046801
CCCH ZF
218
241
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000046802
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046802
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSXETP00000046802
CCCH ZF
113
138
QPVVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046802
CCCH ZF
149
172
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000046804
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046804
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSXETP00000046804
CCCH ZF
179
205
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046804
CCCH ZF
216
239
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000046805
CCCH ZF
17
41
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000046805
CCCH ZF
58
73
LKGRCSRENCKYLHPP
ENSXETP00000046805
CCCH ZF
180
206
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000046805
CCCH ZF
217
240
TVTVCMDYIKGRCSREKCKYFHPP
ENSXETP00000050702
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSXETP00000050702
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSXETP00000050702
CCCH ZF
179
205
DRLEVCREYQRGNCNRGENECRFAHPA
ENSXETP00000050702
CCCH ZF
216
239
TVTVCMDYIKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Xenopus tropicalis
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
2610101N10Rik
Mus musculus
ENSMUSG00000032407
N
0.000
Ame_R004744
Ailuropoda melanoleuca
Ame_R004744
N
0.000
ENSMODG00000010847
Monodelphis domestica
ENSMODG00000010847
N
0.000
ENSPPYG00000014178
Pongo pygmaeus
ENSPPYG00000014178
N
0.000
LOC100051188
Equus caballus
ENSECAG00000022460
N
0.000
LOC100411013
Callithrix jacchus
ENSCJAG00000001639
N
0.000
LOC424773
Gallus gallus
ENSGALG00000002612
N
0.000
Q148C6_BOVIN
Bos taurus
ENSBTAG00000009154
N
0.000
RGD1307882
Rattus norvegicus
ENSRNOG00000008607
N
0.000
sr140
Xenopus tropicalis
ENSXETG00000022133
N
0.000
U2SURP
Pteropus vampyrus
ENSPVAG00000016077
N
0.000
U2SURP
Pan troglodytes
ENSPTRG00000015489
N
0.000
U2SURP
Procavia capensis
ENSPCAG00000015251
N
0.000
U2SURP
Otolemur garnettii
ENSOGAG00000004335
N
0.000
U2SURP
Sorex araneus
ENSSARG00000013779
N
0.000
U2SURP
Sus scrofa
ENSSSCG00000011684
N
0.000
U2SURP
Spermophilus tridecemlineatus
ENSSTOG00000015997
N
0.000
U2SURP
Tupaia belangeri
ENSTBEG00000016313
N
0.000
U2SURP
Taeniopygia guttata
ENSTGUG00000008687
N
0.000
U2SURP
Tetraodon nigroviridis
ENSTNIG00000012767
N
0.000
U2SURP
Takifugu rubripes
ENSTRUG00000017810
N
0.000
U2SURP
Tursiops truncatus
ENSTTRG00000017170
N
0.000
U2SURP
Vicugna pacos
ENSVPAG00000004697
N
0.000
U2SURP
Oryctolagus cuniculus
ENSOCUG00000012121
N
0.000
U2SURP
Ornithorhynchus anatinus
ENSOANG00000003644
N
0.000
U2SURP
Canis familiaris
ENSCAFG00000007973
N
0.000
U2SURP
Choloepus hoffmanni
ENSCHOG00000001300
N
0.000
U2SURP
Cavia porcellus
ENSCPOG00000011656
N
0.000
U2SURP
Danio rerio
ENSDARG00000061490
N
0.000
U2SURP
Dasypus novemcinctus
ENSDNOG00000006427
N
0.000
U2SURP
Erinaceus europaeus
ENSEEUG00000013553
N
0.000
U2SURP
Echinops telfairi
ENSETEG00000000149
N
0.000
U2SURP
Homo sapiens
ENSG00000163714
N
0.000
U2SURP
Gasterosteus aculeatus
ENSGACG00000003763
N
0.000
U2SURP
Gorilla gorilla
ENSGGOG00000005563
N
0.000
U2SURP
Loxodonta africana
ENSLAFG00000002566
N
0.000
U2SURP
Macropus eugenii
ENSMEUG00000000127
N
0.000
U2SURP
Meleagris gallopavo
ENSMGAG00000006549
N
0.000
U2SURP
Myotis lucifugus
ENSMLUG00000002920
N
0.000
U2SURP
Macaca mulatta
ENSMMUG00000002775
N
0.000
U2SURP
Oryzias latipes
ENSORLG00000010235
N
0.000
U2SURP
Anolis carolinensis
ENSACAG00000009512
N
0.000
XM_001372164.1
Monodelphis domestica
ENSMODG00000021242
N
0.000