mbnl1 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000021655 T03649_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.989
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.989
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000046798 CCCH ZF 16 40
ENSXETP00000046798 CCCH ZF 57 72
ENSXETP00000046798 CCCH ZF 179 205
ENSXETP00000046798 CCCH ZF 216 239
ENSXETP00000046799 CCCH ZF 16 40
ENSXETP00000046799 CCCH ZF 57 72
ENSXETP00000046799 CCCH ZF 179 205
ENSXETP00000046799 CCCH ZF 216 239
ENSXETP00000046801 CCCH ZF 18 42
ENSXETP00000046801 CCCH ZF 59 74
ENSXETP00000046801 CCCH ZF 181 207
ENSXETP00000046801 CCCH ZF 218 241
ENSXETP00000046802 CCCH ZF 16 40
ENSXETP00000046802 CCCH ZF 57 72
ENSXETP00000046802 CCCH ZF 113 138
ENSXETP00000046802 CCCH ZF 149 172
ENSXETP00000046804 CCCH ZF 16 40
ENSXETP00000046804 CCCH ZF 57 72
ENSXETP00000046804 CCCH ZF 179 205
ENSXETP00000046804 CCCH ZF 216 239
ENSXETP00000046805 CCCH ZF 17 41
ENSXETP00000046805 CCCH ZF 58 73
ENSXETP00000046805 CCCH ZF 180 206
ENSXETP00000046805 CCCH ZF 217 240
ENSXETP00000050702 CCCH ZF 16 40
ENSXETP00000050702 CCCH ZF 57 72
ENSXETP00000050702 CCCH ZF 179 205
ENSXETP00000050702 CCCH ZF 216 239

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2610101N10Rik Mus musculus ENSMUSG00000032407 N 0.000
Ame_R004744 Ailuropoda melanoleuca Ame_R004744 N 0.000
ENSMODG00000010847 Monodelphis domestica ENSMODG00000010847 N 0.000
ENSPPYG00000014178 Pongo pygmaeus ENSPPYG00000014178 N 0.000
LOC100051188 Equus caballus ENSECAG00000022460 N 0.000
LOC100411013 Callithrix jacchus ENSCJAG00000001639 N 0.000
LOC424773 Gallus gallus ENSGALG00000002612 N 0.000
Q148C6_BOVIN Bos taurus ENSBTAG00000009154 N 0.000
RGD1307882 Rattus norvegicus ENSRNOG00000008607 N 0.000
sr140 Xenopus tropicalis ENSXETG00000022133 N 0.000
U2SURP Pteropus vampyrus ENSPVAG00000016077 N 0.000
U2SURP Pan troglodytes ENSPTRG00000015489 N 0.000
U2SURP Procavia capensis ENSPCAG00000015251 N 0.000
U2SURP Otolemur garnettii ENSOGAG00000004335 N 0.000
U2SURP Sorex araneus ENSSARG00000013779 N 0.000
U2SURP Sus scrofa ENSSSCG00000011684 N 0.000
U2SURP Spermophilus tridecemlineatus ENSSTOG00000015997 N 0.000
U2SURP Tupaia belangeri ENSTBEG00000016313 N 0.000
U2SURP Taeniopygia guttata ENSTGUG00000008687 N 0.000
U2SURP Tetraodon nigroviridis ENSTNIG00000012767 N 0.000
U2SURP Takifugu rubripes ENSTRUG00000017810 N 0.000
U2SURP Tursiops truncatus ENSTTRG00000017170 N 0.000
U2SURP Vicugna pacos ENSVPAG00000004697 N 0.000
U2SURP Oryctolagus cuniculus ENSOCUG00000012121 N 0.000
U2SURP Ornithorhynchus anatinus ENSOANG00000003644 N 0.000
U2SURP Canis familiaris ENSCAFG00000007973 N 0.000
U2SURP Choloepus hoffmanni ENSCHOG00000001300 N 0.000
U2SURP Cavia porcellus ENSCPOG00000011656 N 0.000
U2SURP Danio rerio ENSDARG00000061490 N 0.000
U2SURP Dasypus novemcinctus ENSDNOG00000006427 N 0.000
U2SURP Erinaceus europaeus ENSEEUG00000013553 N 0.000
U2SURP Echinops telfairi ENSETEG00000000149 N 0.000
U2SURP Homo sapiens ENSG00000163714 N 0.000
U2SURP Gasterosteus aculeatus ENSGACG00000003763 N 0.000
U2SURP Gorilla gorilla ENSGGOG00000005563 N 0.000
U2SURP Loxodonta africana ENSLAFG00000002566 N 0.000
U2SURP Macropus eugenii ENSMEUG00000000127 N 0.000
U2SURP Meleagris gallopavo ENSMGAG00000006549 N 0.000
U2SURP Myotis lucifugus ENSMLUG00000002920 N 0.000
U2SURP Macaca mulatta ENSMMUG00000002775 N 0.000
U2SURP Oryzias latipes ENSORLG00000010235 N 0.000
U2SURP Anolis carolinensis ENSACAG00000009512 N 0.000
XM_001372164.1 Monodelphis domestica ENSMODG00000021242 N 0.000