mbnl1 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000021655 T03649_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.989
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.989
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000046798 CCCH ZF 16 40
ENSXETP00000046798 CCCH ZF 57 72
ENSXETP00000046798 CCCH ZF 179 205
ENSXETP00000046798 CCCH ZF 216 239
ENSXETP00000046799 CCCH ZF 16 40
ENSXETP00000046799 CCCH ZF 57 72
ENSXETP00000046799 CCCH ZF 179 205
ENSXETP00000046799 CCCH ZF 216 239
ENSXETP00000046801 CCCH ZF 18 42
ENSXETP00000046801 CCCH ZF 59 74
ENSXETP00000046801 CCCH ZF 181 207
ENSXETP00000046801 CCCH ZF 218 241
ENSXETP00000046802 CCCH ZF 16 40
ENSXETP00000046802 CCCH ZF 57 72
ENSXETP00000046802 CCCH ZF 113 138
ENSXETP00000046802 CCCH ZF 149 172
ENSXETP00000046804 CCCH ZF 16 40
ENSXETP00000046804 CCCH ZF 57 72
ENSXETP00000046804 CCCH ZF 179 205
ENSXETP00000046804 CCCH ZF 216 239
ENSXETP00000046805 CCCH ZF 17 41
ENSXETP00000046805 CCCH ZF 58 73
ENSXETP00000046805 CCCH ZF 180 206
ENSXETP00000046805 CCCH ZF 217 240
ENSXETP00000050702 CCCH ZF 16 40
ENSXETP00000050702 CCCH ZF 57 72
ENSXETP00000050702 CCCH ZF 179 205
ENSXETP00000050702 CCCH ZF 216 239

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.870
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.902
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.880
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.880
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.848
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.848
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.859
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.859
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.880
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.989
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.870
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.848
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.868
LOC100050018 Equus caballus ENSECAG00000024349 I 0.989
LOC100054316 Equus caballus ENSECAG00000021076 I 0.870
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.989
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.859
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.880
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.859
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.924
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.945
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.989
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.989
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.989
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.989
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.978
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.989
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.957
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.781
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.946
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.989
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.978
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.989
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.989
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.989
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.989
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.989
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.989
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.989
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.989
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.989
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.989
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.946
MBNL1 Homo sapiens ENSG00000152601 D 0.989
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.913
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.989
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.989
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.924
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.924
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.989
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.880
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.880
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.880
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.880
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.870
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.857
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.880
MBNL2 Sorex araneus ENSSARG00000002868 I 0.880
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.870
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.880
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.880
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.870
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.880
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.835
mbnl2 Danio rerio ENSDARG00000018460 I 0.859
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.870
MBNL2 Homo sapiens ENSG00000139793 I 0.880
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.846
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.870
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.859
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.880
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.880
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.880
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.880
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.870
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.870
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.880
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.880
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.870
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.880
MBNL3 Homo sapiens ENSG00000076770 I 0.870
MBNL3 Sorex araneus ENSSARG00000006397 I 0.859
MBNL3 Bos taurus ENSBTAG00000014088 I 0.870
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.913
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.880
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.870
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.902
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.870
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.859
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.870
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.859
mbnl3 Danio rerio ENSDARG00000016085 I 0.848
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.859
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.815
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.902
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.870
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.902
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.870
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.870
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.880
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.835
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.779
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.856
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.902
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.880
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.902
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.870
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.902
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.870
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.859
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.796