Medtr3g133170 (Medicago truncatula)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Medtr3g133170 T07624_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g133170.1 RRM 59 118
Medtr3g133170.1 CCHC ZF 155 172

Links

Other CCHC ZF,RRM family RBPs
Other Medicago truncatula RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.808
29848.m004475 Ricinus communis 29848.m004475 N 0.846
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.823
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.859
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.722
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.709
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.846
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.782
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.821
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.859
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.859
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.859
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.821
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.897
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.897
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.808
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.722
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.722
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.722
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.709
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.808
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.872
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.731
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.821
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.734
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.722
MDP0000256723 Malus x domestica MDP0000256723 N 0.795
MDP0000870155 Malus x domestica MDP0000870155 N 0.808
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.897
mgf005494m Mimulus guttatus mgf005494m N 0.821
mgf014721m Mimulus guttatus mgf014721m N 0.821
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.808
PK15383.1 Cannabis sativa PK15383.1 N 0.846
PK23390.1 Cannabis sativa PK23390.1 N 0.833
ppa012111m Prunus persica ppa012111m N 0.795
ppa012147m Prunus persica ppa012147m N 0.833
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.808
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.722
SB04G035540 Sorghum bicolor Sb04g035540 N 0.722
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.744
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.782
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.782
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.821
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.756