GRMZM2G080930 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G080930 T07605_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G080930_P01 RRM 4 63
GRMZM2G080930_P01 CCHC ZF 86 103
GRMZM2G080930_P02 RRM 4 63
GRMZM2G080930_P02 CCHC ZF 86 103
GRMZM2G080930_P03 RRM 4 63
GRMZM2G080930_P03 CCHC ZF 86 103

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB04G035540 Sorghum bicolor Sb04g035540 N 0.974
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.974
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.923
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.923
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.923
SB10G005960 Sorghum bicolor Sb10g005960 N 0.910
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.910
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.897
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.897
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.885
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.873
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.872
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.872
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.833
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.821
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.821
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.810
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.797
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.797
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.797
mgf005494m Mimulus guttatus mgf005494m N 0.785
mgf014721m Mimulus guttatus mgf014721m N 0.785
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.772
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.772
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.759
29848.m004475 Ricinus communis 29848.m004475 N 0.759
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.759
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.759
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.759
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.759
PK15383.1 Cannabis sativa PK15383.1 N 0.759
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.747
ppa012147m Prunus persica ppa012147m N 0.747
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.747
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.747
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.747
PK23390.1 Cannabis sativa PK23390.1 N 0.747
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.747
28610.m000073 Ricinus communis 28610.m000073 N 0.747
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.747
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.747
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.734
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.734
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.734
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.734
ppa012111m Prunus persica ppa012111m N 0.722
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.722
MDP0000870155 Malus x domestica MDP0000870155 N 0.722
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.709
MDP0000256723 Malus x domestica MDP0000256723 N 0.709