LOC_Os02g39720 (Oryza sativa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		LOC_Os02g39720 T07393_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g39720.2 RRM 4 63
LOC_Os02g39720.2 CCHC ZF 86 103
LOC_Os02g39720.3 RRM 4 63
LOC_Os02g39720.3 CCHC ZF 86 103
LOC_Os02g39720.4 RRM 4 63
LOC_Os02g39720.4 CCHC ZF 86 103
LOC_Os02g39720.6 RRM 4 63
LOC_Os02g39720.6 CCHC ZF 86 103

Links

Other CCHC ZF,RRM family RBPs
Other Oryza sativa RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.949
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.949
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.936
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.936
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.936
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.923
SB10G005960 Sorghum bicolor Sb10g005960 N 0.923
SB04G035540 Sorghum bicolor Sb04g035540 N 0.923
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.910
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.910
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.910
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.910
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.885
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.872
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.872
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.861
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.848
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.823
mgf014721m Mimulus guttatus mgf014721m N 0.810
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.810
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.810
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.810
mgf005494m Mimulus guttatus mgf005494m N 0.810
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.810
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.810
PK15383.1 Cannabis sativa PK15383.1 N 0.797
28610.m000073 Ricinus communis 28610.m000073 N 0.797
29848.m004475 Ricinus communis 29848.m004475 N 0.797
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.797
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.785
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.785
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.785
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.785
PK23390.1 Cannabis sativa PK23390.1 N 0.785
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.785
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.785
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.772
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.772
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.772
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.772
ppa012147m Prunus persica ppa012147m N 0.772
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.772
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.759
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.759
ppa012111m Prunus persica ppa012111m N 0.759
MDP0000870155 Malus x domestica MDP0000870155 N 0.759
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.759
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.747
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.747
MDP0000256723 Malus x domestica MDP0000256723 N 0.734
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.734