B9ILD8_POPTR (Populus trichocarpa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		POPTR_0018s03390 T07420_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s03390.1 RRM 4 64
POPTR_0018s03390.1 CCHC ZF 99 116
POPTR_0018s03390.2 RRM 4 63

Links

Other CCHC ZF,RRM family RBPs
Other Populus trichocarpa RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.962
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.949
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.937
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.937
29848.m004475 Ricinus communis 29848.m004475 N 0.937
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.924
mgf014721m Mimulus guttatus mgf014721m N 0.899
mgf005494m Mimulus guttatus mgf005494m N 0.899
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.886
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.886
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.886
PK15383.1 Cannabis sativa PK15383.1 N 0.873
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.861
ppa012147m Prunus persica ppa012147m N 0.861
PK23390.1 Cannabis sativa PK23390.1 N 0.861
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.861
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.861
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.848
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.848
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.848
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.848
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.848
28610.m000073 Ricinus communis 28610.m000073 N 0.835
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.835
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.835
ppa012111m Prunus persica ppa012111m N 0.823
MDP0000870155 Malus x domestica MDP0000870155 N 0.823
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.823
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.823
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.810
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.810
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.810
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.810
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.810
MDP0000256723 Malus x domestica MDP0000256723 N 0.797
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.797
SB10G005960 Sorghum bicolor Sb10g005960 N 0.797
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.797
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.797
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.785
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.785
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.785
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.772
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.772
SB04G035540 Sorghum bicolor Sb04g035540 N 0.772
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.759
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.759
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.759
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.747
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.734
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.734