Medtr1g010600 (Medicago truncatula)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Medtr1g010600 T07622_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g010600.1 RRM 4 63
Medtr1g010600.1 CCHC ZF 97 114

Links

Other CCHC ZF,RRM family RBPs
Other Medicago truncatula RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.962
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.962
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.936
mgf005494m Mimulus guttatus mgf005494m N 0.923
mgf014721m Mimulus guttatus mgf014721m N 0.923
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.923
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.910
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.910
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.897
29848.m004475 Ricinus communis 29848.m004475 N 0.897
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.897
PK23390.1 Cannabis sativa PK23390.1 N 0.897
PK15383.1 Cannabis sativa PK15383.1 N 0.897
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.886
ppa012147m Prunus persica ppa012147m N 0.885
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.885
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.872
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.872
28610.m000073 Ricinus communis 28610.m000073 N 0.872
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.872
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.872
MDP0000870155 Malus x domestica MDP0000870155 N 0.859
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.859
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.859
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.859
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.859
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.859
ppa012111m Prunus persica ppa012111m N 0.846
MDP0000256723 Malus x domestica MDP0000256723 N 0.846
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.846
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.833
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.810
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.810
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.810
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.808
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.797
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.797
SB04G035540 Sorghum bicolor Sb04g035540 N 0.797
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.797
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.785
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.785
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.782
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.782
SB10G005960 Sorghum bicolor Sb10g005960 N 0.772
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.759
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.759
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.747
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.747
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.747
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.747
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.734