BRADI1G46980 (Brachypodium distachyon)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		BRADI1G46980 T07177_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G46980.1 RRM 4 63
BRADI1G46980.1 CCHC ZF 87 104
BRADI1G46980.2 RRM 4 63
BRADI1G46980.2 CCHC ZF 87 104
BRADI1G46980.3 RRM 4 63
BRADI1G46980.3 CCHC ZF 87 104
BRADI1G46980.4 RRM 4 63
BRADI1G46980.4 CCHC ZF 87 104
BRADI1G46980.5 RRM 4 63
BRADI1G46980.5 CCHC ZF 87 104

Links

Other CCHC ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.962
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.962
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.936
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.936
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.923
SB04G035540 Sorghum bicolor Sb04g035540 N 0.897
SB10G005960 Sorghum bicolor Sb10g005960 N 0.897
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.897
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.885
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.885
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.885
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.885
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.872
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.846
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.846
mgf014721m Mimulus guttatus mgf014721m N 0.835
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.835
mgf005494m Mimulus guttatus mgf005494m N 0.835
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.835
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.797
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.797
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.797
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.785
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.785
28610.m000073 Ricinus communis 28610.m000073 N 0.772
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.772
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.772
29848.m004475 Ricinus communis 29848.m004475 N 0.772
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.772
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.772
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.772
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.772
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.772
ppa012147m Prunus persica ppa012147m N 0.759
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.759
PK15383.1 Cannabis sativa PK15383.1 N 0.759
PK23390.1 Cannabis sativa PK23390.1 N 0.759
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.759
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.759
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.759
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.759
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.759
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.759
ppa012111m Prunus persica ppa012111m N 0.747
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.747
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.734
MDP0000870155 Malus x domestica MDP0000870155 N 0.734
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.722
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.709
MDP0000256723 Malus x domestica MDP0000256723 N 0.709
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.709