XM_002878724.1 (Arabidopsis lyrata)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		fgenesh2_kg.4__375__AT2G24590.1 T07376_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__375__AT2G24590.1 RRM 4 63
fgenesh2_kg.4__375__AT2G24590.1 CCHC ZF 99 116

Links

Other CCHC ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.962
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.910
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.910
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.910
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.897
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.885
PK15383.1 Cannabis sativa PK15383.1 N 0.885
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.885
29848.m004475 Ricinus communis 29848.m004475 N 0.872
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.872
mgf005494m Mimulus guttatus mgf005494m N 0.872
mgf014721m Mimulus guttatus mgf014721m N 0.872
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.872
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.861
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.859
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.859
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.859
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.859
ppa012147m Prunus persica ppa012147m N 0.859
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.846
28610.m000073 Ricinus communis 28610.m000073 N 0.833
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.833
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.833
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.821
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.821
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.821
PK23390.1 Cannabis sativa PK23390.1 N 0.821
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.808
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.808
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.808
MDP0000870155 Malus x domestica MDP0000870155 N 0.795
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.785
ppa012111m Prunus persica ppa012111m N 0.782
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.772
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.772
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.772
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.772
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.772
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.772
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.772
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.772
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.769
MDP0000256723 Malus x domestica MDP0000256723 N 0.769
SB10G005960 Sorghum bicolor Sb10g005960 N 0.759
SB04G035540 Sorghum bicolor Sb04g035540 N 0.759
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.759
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.747
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.747
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.747
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.734
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.734