MDP0000256723 (Malus x domestica)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		MDP0000256723 T07676_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000256723 RRM 4 63
MDP0000256723 CCHC ZF 91 108

Links

Other CCHC ZF,RRM family RBPs
Other Malus x domestica RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000870155 Malus x domestica MDP0000870155 N 0.949
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.910
ppa012111m Prunus persica ppa012111m N 0.910
PK23390.1 Cannabis sativa PK23390.1 N 0.910
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.885
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.872
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.872
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.859
28610.m000073 Ricinus communis 28610.m000073 N 0.859
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.846
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.846
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.846
29848.m004475 Ricinus communis 29848.m004475 N 0.833
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.833
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.833
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.833
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.833
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.833
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.821
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.821
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.821
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.821
PK15383.1 Cannabis sativa PK15383.1 N 0.821
mgf005494m Mimulus guttatus mgf005494m N 0.808
mgf014721m Mimulus guttatus mgf014721m N 0.808
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.797
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.795
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.795
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.795
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.795
ppa012147m Prunus persica ppa012147m N 0.782
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.769
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.769
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.769
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.747
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.747
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.734
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.734
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.722
SB04G035540 Sorghum bicolor Sb04g035540 N 0.722
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.722
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.722
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.722
SB10G005960 Sorghum bicolor Sb10g005960 N 0.709
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.709
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.709