PDK_20s1302151g001 (Phoenix dactylifera)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		PDK_20s1302151g001 T07688_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1302151g001 RRM 4 63
PDK_20s1302151g001 CCHC ZF 89 106

Links

Other CCHC ZF,RRM family RBPs
Other Phoenix dactylifera RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.936
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.923
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.910
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.897
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.897
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.897
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.885
PK23390.1 Cannabis sativa PK23390.1 N 0.872
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.859
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.859
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.859
ppa012147m Prunus persica ppa012147m N 0.846
MDP0000870155 Malus x domestica MDP0000870155 N 0.846
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.846
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.846
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.846
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.846
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.846
ppa012111m Prunus persica ppa012111m N 0.846
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.833
29848.m004475 Ricinus communis 29848.m004475 N 0.833
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.823
PK15383.1 Cannabis sativa PK15383.1 N 0.821
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.821
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.821
MDP0000256723 Malus x domestica MDP0000256723 N 0.821
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.810
mgf005494m Mimulus guttatus mgf005494m N 0.808
mgf014721m Mimulus guttatus mgf014721m N 0.808
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.808
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.797
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.797
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.797
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.797
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.795
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.795
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.782
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.782
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.772
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.772
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.772
SB04G035540 Sorghum bicolor Sb04g035540 N 0.759
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.759
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.759
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.747
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.747
SB10G005960 Sorghum bicolor Sb10g005960 N 0.747
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.744
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.734
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.734
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.709