CJA05984 (Caenorhabditis japonica)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 CJA05984 T16732_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.746
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA05984 CSD 83 153

Links

Other CSD family RBPs
Other Caenorhabditis japonica RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.718
146547 Helobdella robusta 146547 I 0.718
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.722
AAA49715 Xenopus laevis AAA49715 I 0.722
AAH41191 Xenopus laevis AAH41191 I 0.722
AAH42217 Xenopus laevis AAH42217 I 0.722
AAI06324 Xenopus laevis AAI06324 I 0.722
AAI30161 Xenopus laevis AAI30161 I 0.722
Bm1_57515 Brugia malayi Bm1_57515 I 0.789
CAA42778 Xenopus laevis CAA42778 I 0.722
CBG02981 Caenorhabditis briggsae CBG02981 I 0.944
CBN16711 Caenorhabditis brenneri CBN16711 I 0.930
cey-1 Caenorhabditis elegans F33A8.3 I 0.944
CRE01789 Caenorhabditis remanei CRE01789 I 0.930
CSDA Monodelphis domestica ENSMODG00000018248 I 0.722
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.722
CSDA Homo sapiens ENSG00000060138 I 0.722
CSDA Macaca mulatta ENSMMUG00000022469 I 0.722
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.722
CSDA Loxodonta africana ENSLAFG00000017247 I 0.722
CSDA Pan troglodytes ENSPTRG00000004681 I 0.722
Csda Mus musculus ENSMUSG00000030189 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.708
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.722
CSDA Echinops telfairi ENSETEG00000002557 I 0.722
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.722
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.722
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.722
CSDA Sus scrofa ENSSSCG00000000633 I 0.722
CSDA Cavia porcellus ENSCPOG00000011329 I 0.722
Csda Dipodomys ordii ENSDORG00000009103 I 0.722
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.722
Csda Rattus norvegicus ENSRNOG00000005480 I 0.722
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.704
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.708
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.704
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.722
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.722
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.708
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.722
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.722
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.708
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.722
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.708
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.722
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.722
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.722
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.704
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.761
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.708
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.732
ISCW005281 Ixodes scapularis ISCW005281 I 0.746
LOAG_11791 Loa loa LOAG_11791 I 0.718
LOC100065107 Equus caballus ENSECAG00000013777 I 0.722
LOC100067336 Equus caballus ENSECAG00000023592 I 0.722
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.722
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.722
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.704
P21573 Xenopus laevis P21573 I 0.722
PHUM156710 Pediculus humanus PHUM156710 I 0.704
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.859
Q00436 Xenopus laevis Q00436 I 0.722
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.722
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.722
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.722
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.789
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.732
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.708
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.722
YB-1 Homo sapiens ENSG00000065978 D 0.722
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.722
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.722
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.722
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.722
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.722
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.722
Ybx1 Mus musculus ENSMUSG00000028639 I 0.722
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.722
YBX1 Microcebus murinus ENSMICG00000014984 I 0.722
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.722
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.722
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.722
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.722
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.722