146547 (Helobdella robusta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 146547 T17222_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.708
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.708
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.708
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
146547 CSD 2 72

Links

Other CSD family RBPs
Other Helobdella robusta RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.831
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.775
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.761
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.750
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.750
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.746
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.736
YBX2 Canis familiaris ENSCAFG00000016128 I 0.736
YBX2 Procavia capensis ENSPCAG00000008019 I 0.736
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.736
LOC100072964 Equus caballus ENSECAG00000009996 I 0.736
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.736
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.736
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.736
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.736
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.736
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.736
Ybx2 Mus musculus ENSMUSG00000018554 I 0.736
YBX2 Sus scrofa ENSSSCG00000017938 I 0.736
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.732
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.732
CRE01789 Caenorhabditis remanei CRE01789 I 0.732
CBN16711 Caenorhabditis brenneri CBN16711 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
PHUM156710 Pediculus humanus PHUM156710 I 0.732
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
cey-1 Caenorhabditis elegans F33A8.3 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.722
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.722
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
CSDA Monodelphis domestica ENSMODG00000018248 I 0.722
CSDA Macaca mulatta ENSMMUG00000022469 I 0.722
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.722
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.722
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.722
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.722
CSDA Loxodonta africana ENSLAFG00000017247 I 0.722
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.722
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.722
YBX1 Microcebus murinus ENSMICG00000014984 I 0.722
Ybx1 Mus musculus ENSMUSG00000028639 I 0.722
Csda Mus musculus ENSMUSG00000030189 I 0.722
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.722
CSDA Pan troglodytes ENSPTRG00000004681 I 0.722
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.722
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.722
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.722
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.722
YBX2 Sorex araneus ENSSARG00000000488 I 0.722
CSDA Sus scrofa ENSSSCG00000000633 I 0.722
Csda Rattus norvegicus ENSRNOG00000005480 I 0.722
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.722
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.722
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.722
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.722
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.722
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.722
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.722
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.722
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.722
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.722
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.722
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.722
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.722
P21574 Xenopus laevis P21574 I 0.722
P21573 Xenopus laevis P21573 I 0.722
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.722
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.722
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.722
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.722
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.722
CAA42778 Xenopus laevis CAA42778 I 0.722
ybx2-a Xenopus laevis AAI69706 D 0.722
AAH41191 Xenopus laevis AAH41191 I 0.722
AAA49716 Xenopus laevis AAA49716 I 0.722
AAA49715 Xenopus laevis AAA49715 I 0.722
AAH42217 Xenopus laevis AAH42217 I 0.722
AAI06324 Xenopus laevis AAI06324 I 0.722
AAI69704 Xenopus laevis AAI69704 I 0.722
AAI55915 Xenopus laevis AAI55915 I 0.722
AAI30161 Xenopus laevis AAI30161 I 0.722
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.722
Q00436 Xenopus laevis Q00436 I 0.722
LOC100067336 Equus caballus ENSECAG00000023592 I 0.722
LOC100065107 Equus caballus ENSECAG00000013777 I 0.722
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.722
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.722
CSDA Echinops telfairi ENSETEG00000002557 I 0.722
YB-1 Homo sapiens ENSG00000065978 D 0.722
CSDA Homo sapiens ENSG00000060138 I 0.722
YBX2 Homo sapiens ENSG00000006047 D 0.722
Csda Dipodomys ordii ENSDORG00000009103 I 0.722
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.722
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.722
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.722
CSDA Cavia porcellus ENSCPOG00000011329 I 0.722
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GF10852 Drosophila ananassae FBgn0087892 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
PHUM156720 Pediculus humanus PHUM156720 I 0.718
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.718
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
CBG02981 Caenorhabditis briggsae CBG02981 I 0.718
CJA05984 Caenorhabditis japonica CJA05984 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
AAA49924 Xenopus laevis AAA49924 I 0.708
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.708
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.708
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.708
P45441 Xenopus laevis P45441 I 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.708
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.708
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.708
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.708
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.708
AAI55914 Xenopus laevis AAI55914 I 0.708
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.704
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.704
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.704
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.704
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.704
GD12750 Drosophila simulans FBgn0184477 I 0.704
yps Drosophila melanogaster FBgn0022959 I 0.704
GM24682 Drosophila sechellia FBgn0179545 I 0.704
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.704
GE20150 Drosophila yakuba FBgn0237472 I 0.704
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.704